GgaINT0126681 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9073808-9074362:+
Coord C1 exon
chr17:9073808-9073923
Coord A exon
chr17:9073924-9074144
Coord C2 exon
chr17:9074145-9074362
Length
221 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TCACAATTTTTCTTTCCCAGGAG
3' ss Score
9.42
Exon sequences
Seq C1 exon
AACTGAAACATGTTCTGGAAATGTTGGAGATAGAAAATAATGAACTTCAGGGTTTGAAACTACAACATAATCAAAAGGTCAATGAACTAGAGAAGACTCAGGTTGCAGTTCTAGAA
Seq A exon
GTAAGTATTTATATTACAGCTGTTGTAGAGAGTAATGTAGAAAGAAGAGAGATGCATGTTCTGTGATTCTGTTAAGGTCTGGGTAACAGTCTCTGTACTCTTAAGTTGGAGTACCATAGCCTGCATATGTTCTGCGGATGAAAGGTTTTAAACTGCTGCAGATAAATATGTTCACTTATTCTTTTTCACCACGTGTGTTGCTCACAATTTTTCTTTCCCAG
Seq C2 exon
GAGAAGTTAAAATTGGAGAATATTCAGAGATTATTTCATTGTCAGCAAGGGGAAGTAGACTGGCAGGAACAACTACTTCAGAAGGACCGCCAGGAAAATGAACATCTGGTTTCTCAAATGCGCACTCTGCAAAATAATATTGAGTCTCTGAATAAGGAAAAGCAAAAGCTTGAAGAGGACTGTCAGAGTTTGGAAAAGAAGCTGTCACAAACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.342
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTCTGGAAATGTTGGAGA
R:
ACTCTGACAGTCCTCTTCAAGCT
Band lengths:
298-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]