HsaINT0033509 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121161856-121162271:+
Coord C1 exon
chr9:121161856-121161971
Coord A exon
chr9:121161972-121162053
Coord C2 exon
chr9:121162054-121162271
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TCCTCTTTTATCTGATTTAGGAG
3' ss Score
9.94
Exon sequences
Seq C1 exon
AACTAAAGAATATTCTGGACATGTTGCAACTTGAAAACCATGAGCTACAAGGTTTGAAGCTACAACATGACCAAAGGGTATCTGAATTAGAGAAGACTCAGGTGGCAGTGCTAGAG
Seq A exon
GTAATGAACAAAGCCAGTGTACCCTTAAGAAACTGAAGTCTTTCTCATTTAAGATGTTTGAGTCCTCTTTTATCTGATTTAG
Seq C2 exon
GAGAAACTGGAGTTAGAGAATTTGCAGCAGATATCCCAGCAGCAGAAAGGGGAAATAGAGTGGCAGAAGCAGCTCCTTGAGAGGGATAAACGAGAAATAGAACGAATGACTGCTGAGTCCCGAGCTTTACAATCGTGTGTTGAGTGTTTGAGCAAAGAAAAGGAAGATCTCCAAGAGAAATGTGACATTTGGGAAAAAAAGTTGGCACAAACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTCAGGTGGCAGTGCTA
R:
TGCTCAAACACTCAACACACGA
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development