RnoINT0038574 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14357274-14357687:+
Coord C1 exon
chr3:14357274-14357389
Coord A exon
chr3:14357390-14357469
Coord C2 exon
chr3:14357470-14357687
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
GTCTCTTTTCTCTGCCTCAGGGG
3' ss Score
10.36
Exon sequences
Seq C1 exon
AACTAAAGAATGTTGCAGACATACTGCAGCTTGAAACCAACGAGCTACAAAGTCTGAAGCTACAGCATGACCAGAAGGTGGTGGAGCTGGAGAAGACTCAGGTCGACCTGCTGGAG
Seq A exon
GTATGCACAGAGGAAAGCGCTGAGCCTGTGCCACCCCAGCCTCTCTTCCAGGATGTCTGAGTCTCTTTTCTCTGCCTCAG
Seq C2 exon
GGGAAGCTAGAGCTAGAGAGTTTGCAGCAGACAGCTCAGCAGCAGAGACGGGAGCTAGAGCGGCAGAGACAACTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCTGAGACCCAGGCACTACAGTCCTGCATCGAATGTCTGAATAAAGAAAAGGAACATCTCCAAGAGCAGTGCGAGAGTTGGGAAAAGAAGTCTTCCCACGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGCTTGAAACCAACGA
R:
TCTCCAGGAGTTGTCTCTGCC
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]