GgaINT0126686 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9077202-9077940:+
Coord C1 exon
chr17:9077202-9077427
Coord A exon
chr17:9077428-9077734
Coord C2 exon
chr17:9077735-9077940
Length
307 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
AGTTTAAATATTGTTTACAGAAC
3' ss Score
4.54
Exon sequences
Seq C1 exon
ATCCTTTGTAACCTCAAGCAAAATTCAGAACACGAAGGGAAAAAACTGGAAGAAAATACTGCTAAACTCAAAGAACAGAAACTGCTTTTGGAAAAGGAACTCATGGATCAACGTGAGAAACTGGAACAGGCAGTAGCAAAAGTAAGGCTGACAGAAGAAAACAACAGGAAGCTGGAAAAAGAAGCATCTCAATTTGCAGCACTTGAAGAAACTATCAGAAAAAGCA
Seq A exon
GTAAGATCTATCACACAAATAAGTTTATCATTACAGTGTGTGGGCGCTAAGTCTAGTGAAACCAAACAATAATTCTGTTAATCTTGCTTGGATTTTAATTCAGCACTTCATTTGACTCTTGATCCCTAAATTCATTTGCTCAAAGAACTGAAGTTCTGAAGGCAGCTAGCTTTCTGTCACCTCTCACCTGGTGCCAATATTTATCTGAACGTTACTCAGCAGAGTAGTTTGAAAATATCTAGTGTCTGTAATATGCCAAGGTATTTACGTTTCTGCTAATCAGTGTCAGTTTAAATATTGTTTACAG
Seq C2 exon
AACATCAGATATCAGAAAAAGAGCTACAGTTACAACAAAAAAATAGAGAAATTCAGTCTCTCCAAAAAGAATTGGAACTCTCCAAGTCTGAGCTGAGCCATCTCCAGGGGCAGCTAGCATCAGAGAGGAAAAGAGCTGAAAAACGAATCTGCAGTCTGAAAGAAGCAATGAAAATGCAGAGGACGCAGTTTGAAAGAGAACTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.493
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAAGCAAAATTCAGAACACG
R:
TCCTCTCTGATGCTAGCTGCC
Band lengths:
345-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]