RnoINT0038579 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14363689-14364719:+
Coord C1 exon
chr3:14363689-14363914
Coord A exon
chr3:14363915-14364513
Coord C2 exon
chr3:14364514-14364719
Length
599 bp
Sequences
Splice sites
5' ss Seq
CCAGTACGT
5' ss Score
7.19
3' ss Seq
CATGCTCACTCCCCTCCCAGAAC
3' ss Score
10.02
Exon sequences
Seq C1 exon
GTGTTTCAAAAACTCCAGAAAGAAAGAGAAAGTGAGGAGCAGAAGTTAGTGGCTAGCATAGTGTCGCTGGAGCAGCAGCAGGGACAGCTGGAGAGGGAGCTGATGGACCAGAAAAGCAAGCTGGAGTGGCTGCTCACAGACGTGTCGGCCGCTGAAGGACGCCTCAGGACCCTGCAGAAAGAGGAGCGGTGCACTGAGAGCCTGGAGAAGATGCTGTCCCAGGCCA
Seq A exon
GTACGTTCACTGCAGACATCAGGTGGGGGTGGGGGGCTGTCCTTGTAGTCTGCTGGAGAAGACCCAGACCTGGCCACCCAAGGAGGAGGCAGGAGAACCAAAGCAGGAAGGAAGGCAGCGTCCCTGTGAAGGATGGTCAAGGTTGCAGGGAAGCAGGGCAAGTGTGTCTTTATGACCATGTGACCCTGAGACTGGCCAATGTGTCTCACGTGCCTGTCTGCCTCTTCTAAGAGCCATGCACAGGGCCGTAGGACATCAAGGTGGGAAGTCAAGAGGCTCTGAAGGACAGGCTATTCGGGAGCTGTACAGGGGGCTCAACTGTTCAGAAACACAGCATCAGCAGCCAAAGGGTGCGTGCAGGAGTGGCCAAAGTTGGGATTTACTTTGGAGTCGGTTTGCTCTCTCTGGGCGAACCTCTCTTGAGCCTGTGGAGTGGGTTGGGTTGGGGCATGCTTGGGAGAGCCAGTACTGGAGGGAGACAGCAGAGGAGGGAGCATGCCACTCGGTAGGCAGCCTGCCCGTGAGGAGCACTGAGCTCTACTCACTGCTGGCCCAGGACCACTGGCCAAACCTTCTGAGCATGCTCACTCCCCTCCCAG
Seq C2 exon
AACAGCAGCTTTCAGAGCGGGAGCAGCAGCTGATGGAGAAGTCGGGTGACCTGCTGGCCCTGCAGAAAGAGGCCGATGGCATGAGGGCAGACTTCAGCCTACTGAGAAACCAGTTCTTAACAGAAAGGAAGAAGGCAGAGAAGCAGGTGGCTGGGCTGAAGGAGGCACTGAAGATCCAGCGGAGCCAGCTGGAGAAGAACCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=NA C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAGGGAGCTGATGGAC
R:
GAAGGTTCTTCTCCAGCTGGC
Band lengths:
343-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]