MmuINT0034561 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35171021-35172043:+
Coord C1 exon
chr2:35171021-35171246
Coord A exon
chr2:35171247-35171837
Coord C2 exon
chr2:35171838-35172043
Length
591 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TGTGCACACTCACATTCCAGAAC
3' ss Score
7.44
Exon sequences
Seq C1 exon
ATGTTTCAAAAACTCCAGAAAGAAAGAGAACGTGAGGAGCAGAAGTTCGAGGCTGGTAAAGTGACGCTGGAGCAGCAGCAGAGGCAGCTGGAGAAGGAGCTGACGGACCAGAAAAGCAGGCTGAAGCAGCTGCTCACAGACGTGTCGGCAGCTGAAGGACGCCTGGGAACCCTGCAGGAAGAGGAGCGGCGCATTGAGGGCCTGGAGAGGATGCTGTCCCAGGCCA
Seq A exon
GTAAGTCCACGGCCACCATCCAGGGAAGGGTGGGAGCGGGGCTGTCCTGGTCGTCTGGTGAAGTATGTGAGGAAGACCCAGACCTGGCCACCCCAGGAGGAGGCAGGAGAGCCAAAGCAGGAAGGAAGGCAACAGCCCTGGGAAGGATGGCCAAGGACGCAGGGAGGTAGGGCGAATGTATCTTTATGGTGAAGTTTGACCCTGAGACTGGCCAATGTGTCTCTTCGTGCCCTTGAACCGTGCACAGGAAAGCAGGACATTACAGTGGGATGTTAGAGTCTCTGAAGGACAAGTTATTTGGGAGTAGTGACCTCAGCTATTGGGAAACACAGTGTCAGCAGCCGAAGGTTGAATGCATGAGCTAAGCTAGAGTTGGATTTACTTTGGAGTCAGTTTGCTCTCCCTTGGCGAAACTTTCTTGAGCCTGTGGAGTAGGCCGCAGACTTGTGCGAGCCAGTACTAGAGGGAAACAGCAGAGTAGGGAACATTCCACTCACTAACAGGCAGCCTGCACTAAGGAGCACAGGGCTCTGCCCACAGCTGGCCCAGGGCCACGGCCAACCCTACTAAGTGTGCACACTCACATTCCAG
Seq C2 exon
AACAGCAGCTTTCAGAACGGGAGCAGCAGCTAATGGCCAAGTCAGGTGAGCTGCTGGCCCTGCAGAAAGAGGCTGACGATATGAGGGCCGACTTCAGCCTCCTGAGGAACCAGTTCTTAACAGAAAGGAAGAAGGCAGAGAAGCAGGTGGCCGGGCTAAAGGAAGCACTGAAGATCCAGCGCAGTCAGCTGGAGAAAAACCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(46.5=69.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGGAGCAGAAGTTCGAG
R:
CCTGCTTCTCTGCCTTCTTCC
Band lengths:
343-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types