GgaINT0126687 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9077735-9078383:+
Coord C1 exon
chr17:9077735-9077940
Coord A exon
chr17:9077941-9078242
Coord C2 exon
chr17:9078243-9078383
Length
302 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TCTTTTCTGCATTTTCCTAGGAA
3' ss Score
9.16
Exon sequences
Seq C1 exon
AACATCAGATATCAGAAAAAGAGCTACAGTTACAACAAAAAAATAGAGAAATTCAGTCTCTCCAAAAAGAATTGGAACTCTCCAAGTCTGAGCTGAGCCATCTCCAGGGGCAGCTAGCATCAGAGAGGAAAAGAGCTGAAAAACGAATCTGCAGTCTGAAAGAAGCAATGAAAATGCAGAGGACGCAGTTTGAAAGAGAACTGCAT
Seq A exon
GTAAGTCCTGACTGGAGGAGGGGGAGAATGTTACAGGTTTTTGGTTATTTTTAAACAGTAAAATGACAGAATACCCCTTTTATTGCTGAGGAGCAAAAGTCATGTGTTAACTTTATGATTAGACAGATCTTGAAGCAGCCAAACTGATATCTCCAGGCTGTGCTGCAGAGTACCTGTGGTTACTCTTATTTAATGCTGTTTCTGCATTTTAACTTGAAGAAATTGTCTCCTGTAGGCTCTCTTGATTCATTTTCTCAAGTGGGTACTCATGGTAAAACGCAATCTTTTCTGCATTTTCCTAG
Seq C2 exon
GAACAAAAGCGTGAAAATAACTGCCTGCAGAGTGATATAGCAGCTGCTGAACAAGTAGCACAGAATAACCATGAACGCACCAAGCGCCTCATTAAAGAGCTTGGCCAGATCCAGCAGGACTACATGGATCTCCAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=NA C2=0.787
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATATCAGAAAAAGAGCTACAGT
R:
TGGTTTTGGAGATCCATGTAGTCC
Band lengths:
342-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]