HsaINT0033515 @ hg19
Intron Retention
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123931889-123933826:+
Coord C1 exon
chr9:123931889-123932094
Coord A exon
chr9:123932095-123933685
Coord C2 exon
chr9:123933686-123933826
Length
1591 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TTTTCTTCCTCCTGTGCTAGGAG
3' ss Score
9.43
Exon sequences
Seq C1 exon
AACGGCAGCTTTCAGAAAGGGAGCAGCAATTGGTGGAGAAATCAGGTGAGCTGTTGGCCCTCCAGAAAGAGGCAGATTCTATGAGGGCAGACTTCAGCCTTCTGCGGAACCAGTTCTTGACAGAAAGAAAGAAAGCTGAGAAGCAGGTGGCCAGCCTGAAGGAAGCACTTAAGATCCAGCGGAGCCAGCTGGAGAAAAACCTTCTT
Seq A exon
GTGAGTACCTGCTGCCGTGGCAGTTTGTGAGGAAATGATAAATTTAAAATTTTAAACTGCAACACCACTTCAACACAGAGAAAATAAATTACCCATCAACCCAGTCCTGAACCCAGCTGTTGTTATTGATGTATTTATGCATCATTTGTCCTTGAAGTTGATGGTAAGTTTTACCTGGGACGGGTGCAGCCTCAATGGAGCTCTGGCTGGCTGGGGAGACTGTTGGTGTGAACAGCCATTATCAGCACAAAGTAGACAGCATGTTCTGCCAGCAAGCCTCAGTTTACACCTCCACTGGCAGGGAGGAGGGGGTGTTGAAGAAGCCTTCTCTAGACGGTTGTTTTTTAAGATGGCATCTTGCTTTGTCTCCCATGCTAGATTGAGTGGCGCAATCTCAGCTCACTGCAGCCTCTGCTTCCTGGGTTCAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGCGCCACCACGCCCGACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCAGGTTGACCAGGCTAGTCCTGAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAGGTGCTGGGATTACAGGCATGAGCTACCGTGCCTGGCTCATAGAGAGTTTATTTTTATTTTTATTTTCAAGACAGAGTCTTGCTCTGTCGCCCAGTCTGGAGTGCAGTGGCATGATCTCAGTTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGTCTCAGCCTCCTGAGTATCTGGAATTACAGGCGTGTGCCACCATGCCTGGATAATTTTTGTATTTTTAGTAGAGACGGGGTTCACCATGTTGGCCAGGCTGGTCTTGCACTCCTGACCTTGTGATCCACACGACTTGGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGCGCCTAGCCAGTTTTATTACACTGCTGTAGTCAGTGCCTACAAATTTTTCTCATCCTGCCCTTTTTGGCCAACATTAGCTTTAATCATTATCCTAAAACCAGGAAGCTCAATCTACCATGCTTTCATCCTTGAAATAAATTTGGGAAGTGACACTCAGGTCAGAATAATTTATGGTGGATGGAGACAGGTGAGCAGCAATGGAACTGTCAAGGGGGAGGATTTTTCCACTACCCTCTGGAGGGGTTAGTGGAGCCCTGTTGTATGAAAGGAACTTTTAAACCATGTGTGTCTCTCAAAGGGGATACGCTGATAACTAGTGATAGGCAGATCGTCATAAAGATGGAATATAGATGTCTAAAATTTAATCCTACCAGTAACCCTGTGATGATGGGTATTATTATTCTCATTTTACAGACAATTAATGAAGACTCAGAAAGGGATAGTAGCTTATTATCAAAGGTAATGCTAACAGACTCTGACGTGTATATACGCCCAGCTGTATTTGATCTGCCCATGAAAGGCCGATAGAATTATCCCCATTTGACAGCTAGAGAAGCTGAGGCCCAGAAGGGGAATGAAGTTATAGAGCTAGTGAGTGTGTAAGCCAGCAAACCACACCTCCATGTGTTAGATCGCAGAGTTATTTTCTTCCTCCTGTGCTAG
Seq C2 exon
GAGCAAAAACAGGAGAACAGCTGCATACAAAAGGAAATGGCAACAATTGAACTGGTAGCCCAGGACAACCATGAGCGGGCCAGGCGCCTGATGAAGGAGCTCAACCAGATGCAGTATGAGTACACGGAGCTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-CEP110:NM_007018:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.372
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTTCAGAAAGGGAGCA
R:
TGTTTCTTGAGCTCCGTGTACT
Band lengths:
342-1933
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)