HsaEX0014670 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123931889-123933826:+
Coord C1 exon
chr9:123931889-123932094
Coord A exon
chr9:123933437-123933481
Coord C2 exon
chr9:123933686-123933826
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTATTATTCTCATTTTACAGACA
3' ss Score
10.02
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AACGGCAGCTTTCAGAAAGGGAGCAGCAATTGGTGGAGAAATCAGGTGAGCTGTTGGCCCTCCAGAAAGAGGCAGATTCTATGAGGGCAGACTTCAGCCTTCTGCGGAACCAGTTCTTGACAGAAAGAAAGAAAGCTGAGAAGCAGGTGGCCAGCCTGAAGGAAGCACTTAAGATCCAGCGGAGCCAGCTGGAGAAAAACCTTCTT
Seq A exon
ACAATTAATGAAGACTCAGAAAGGGATAGTAGCTTATTATCAAAG
Seq C2 exon
GAGCAAAAACAGGAGAACAGCTGCATACAAAAGGAAATGGCAACAATTGAACTGGTAGCCCAGGACAACCATGAGCGGGCCAGGCGCCTGATGAAGGAGCTCAACCAGATGCAGTATGAGTACACGGAGCTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX5-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.087 A=0.800 C2=0.372
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAGCTGGAGAAAAACC
R:
GGTTGAGCTCCTTCATCAGGC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)