HsaEX0014670 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121169611-121171548:+
Coord C1 exon
chr9:121169611-121169816
Coord A exon
chr9:121171159-121171203
Coord C2 exon
chr9:121171408-121171548
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTATTATTCTCATTTTACAGACA
3' ss Score
10.02
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AACGGCAGCTTTCAGAAAGGGAGCAGCAATTGGTGGAGAAATCAGGTGAGCTGTTGGCCCTCCAGAAAGAGGCAGATTCTATGAGGGCAGACTTCAGCCTTCTGCGGAACCAGTTCTTGACAGAAAGAAAGAAAGCTGAGAAGCAGGTGGCCAGCCTGAAGGAAGCACTTAAGATCCAGCGGAGCCAGCTGGAGAAAAACCTTCTT
Seq A exon
ACAATTAATGAAGACTCAGAAAGGGATAGTAGCTTATTATCAAAG
Seq C2 exon
GAGCAAAAACAGGAGAACAGCTGCATACAAAAGGAAATGGCAACAATTGAACTGGTAGCCCAGGACAACCATGAGCGGGCCAGGCGCCTGATGAAGGAGCTCAACCAGATGCAGTATGAGTACACGGAGCTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX3-9/10=8-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.087 A=0.800 C2=0.376
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000373855fB1566
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCAGCTGGAGAAAAACC
R:
GGTTGAGCTCCTTCATCAGGC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development