HsaALTA1019924-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121169611-121171548:+
Coord C1 exon
chr9:121169611-121169816
Coord A exon
chr9:121171408-121171419
Coord C2 exon
chr9:121171420-121171548
Length
12 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TTTTCTTCCTCCTGTGCTAGGAG
3' ss Score
9.43
Exon sequences
Seq C1 exon
AACGGCAGCTTTCAGAAAGGGAGCAGCAATTGGTGGAGAAATCAGGTGAGCTGTTGGCCCTCCAGAAAGAGGCAGATTCTATGAGGGCAGACTTCAGCCTTCTGCGGAACCAGTTCTTGACAGAAAGAAAGAAAGCTGAGAAGCAGGTGGCCAGCCTGAAGGAAGCACTTAAGATCCAGCGGAGCCAGCTGGAGAAAAACCTTCTT
Seq A exon
GAGCAAAAACAG
Seq C2 exon
GAGAACAGCTGCATACAAAAGGAAATGGCAACAATTGAACTGGTAGCCCAGGACAACCATGAGCGGGCCAGGCGCCTGATGAAGGAGCTCAACCAGATGCAGTATGAGTACACGGAGCTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-78-96,78-95,78-94,78-93-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.376
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTTAAGATCCAGCGGAG
R:
CTCATGGTTGTCCTGGGCTAC
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains