MmuALTA1038444-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35171838-35173157:+
Coord C1 exon
chr2:35171838-35172043
Coord A exon
chr2:35173017-35173022
Coord C2 exon
chr2:35173023-35173157
Length
6 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTGCCTCCCTGCATGCTAGGAG
3' ss Score
8.02
Exon sequences
Seq C1 exon
AACAGCAGCTTTCAGAACGGGAGCAGCAGCTAATGGCCAAGTCAGGTGAGCTGCTGGCCCTGCAGAAAGAGGCTGACGATATGAGGGCCGACTTCAGCCTCCTGAGGAACCAGTTCTTAACAGAAAGGAAGAAGGCAGAGAAGCAGGTGGCCGGGCTAAAGGAAGCACTGAAGATCCAGCGCAGTCAGCTGGAGAAAAACCTCCTG
Seq A exon
GAGCAG
Seq C2 exon
AAGCAGGAGAACAGCTGCATGCAAAAGGAAATGGCTACAATTGAGCTGGTGGCCCAGGACAACCACGAGAGGGCCAGGCGCCTCATGAAGGAGCTGAGCCAGATGCAGCAGGAGTACCTGGAACTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-78-96,78-95,78-94,78-93,78-92-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGATCCAGCGCAGTCAG
R:
GGGCCACCAGCTCAATTGTAG
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types