RnoALTA0009647-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14364514-14365846:+
Coord C1 exon
chr3:14364514-14364719
Coord A exon
chr3:14365706-14365711
Coord C2 exon
chr3:14365712-14365846
Length
6 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTGCCTCCCTCTATGCTAGGAG
3' ss Score
8.9
Exon sequences
Seq C1 exon
AACAGCAGCTTTCAGAGCGGGAGCAGCAGCTGATGGAGAAGTCGGGTGACCTGCTGGCCCTGCAGAAAGAGGCCGATGGCATGAGGGCAGACTTCAGCCTACTGAGAAACCAGTTCTTAACAGAAAGGAAGAAGGCAGAGAAGCAGGTGGCTGGGCTGAAGGAGGCACTGAAGATCCAGCGGAGCCAGCTGGAGAAGAACCTTCTG
Seq A exon
GAGCAG
Seq C2 exon
AAACAGGAGAACAGCTGCATGCAAAAGGAAATGGCGACAATTGAACTGGTAGCCCAGGACAACCACGAGAGGGCCAGGCGCCTCATGAAGGAGCTCCGTCAGATGCAGCAGGAATACCTGGAGCTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-53-80,53-79,53-78-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.532
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGGCAGAGAAGCAGG
R:
TTTGCATGCAGCTGTTCTCCT
Band lengths:
105-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]