HsaEX0014671 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121169611-121173509:+
Coord C1 exon
chr9:121169611-121169816
Coord A exon
chr9:121171408-121171548
Coord C2 exon
chr9:121173243-121173509
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCCTCCTGTGCTAGGAG
3' ss Score
9.43
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AACGGCAGCTTTCAGAAAGGGAGCAGCAATTGGTGGAGAAATCAGGTGAGCTGTTGGCCCTCCAGAAAGAGGCAGATTCTATGAGGGCAGACTTCAGCCTTCTGCGGAACCAGTTCTTGACAGAAAGAAAGAAAGCTGAGAAGCAGGTGGCCAGCCTGAAGGAAGCACTTAAGATCCAGCGGAGCCAGCTGGAGAAAAACCTTCTT
Seq A exon
GAGCAAAAACAGGAGAACAGCTGCATACAAAAGGAAATGGCAACAATTGAACTGGTAGCCCAGGACAACCATGAGCGGGCCAGGCGCCTGATGAAGGAGCTCAACCAGATGCAGTATGAGTACACGGAGCTCAAGAAACAG
Seq C2 exon
ATGGCAAACCAAAAAGATTTGGAGAGAAGACAAATGGAAATCAGTGATGCAATGAGGACACTTAAATCTGAGGTGAAGGATGAAATCAGAACCAGCTTGAAGAATCTTAATCAGTTTCTTCCAGAACTACCAGCAGATCTAGAAGCTATTTTGGAAAGAAACGAAAACCTAGAAGGAGAATTGGAAAGCTTGAAAGAGAACCTTCCATTTACCATGAATGAGGGACCTTTTGAAGAAAAACTGAACTTTTCCCAAGTTCACATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX3-10/10=8-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.376 C2=0.365
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGCAATTGGTGGAGAA
R:
AGTGTCCTCATTGCATCACTGA
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development