DreEX0002925 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62709493-62713834:-
Coord C1 exon
chr5:62713701-62713834
Coord A exon
chr5:62709819-62709956
Coord C2 exon
chr5:62709493-62709654
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTAACTAGAGCTTGTTTCAGGAT
3' ss Score
-2.1
5' ss Seq
ACAGTAATT
5' ss Score
1.08
Exon sequences
Seq C1 exon
AGCAGGAGCTGTGTGAGCGGGACGCCAGACTCCAGCAGGCTTTTAAAGACACCCATCGCCTGCAGGAGACTCTGCTGTCTGAAAAGACTAACCACAGCCACACAAATAGGTCAAACCTGCAGAGAGTGGAAAAG
Seq A exon
GATCGCGTGCGTCTCCAAAGTGACCTGCTGACTATCGAAAAATCTGCCCAAGAAAACCACCAACAAGCCAGAACACTACAAAAACAGCTCGGCACCATTTCCCAAGAGCTCCTCAGCCTCAAAGACACAGTTCAAACA
Seq C2 exon
CTGCAGAAGCAGGAGGAGGAGAGCAGTAGTGCATTCTGGGAGATCAACCGCAGCACAGCGGAGCTCGAGACGCCCTCTAGTGCCTCCTCAGACACTGACAGCCTGAAAGAGAACCGGCCTGCTGTTACACTCTCCATGGGGAATCCGGCATACAACACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=0.516 C2=0.890
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAGACACCCATCGCCTGC
R:
GTGTTGTATGCCGGATTCCCC
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]