GgaEX6015536 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9077735-9078909:+
Coord C1 exon
chr17:9077735-9077940
Coord A exon
chr17:9078243-9078383
Coord C2 exon
chr17:9078634-9078909
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTGCATTTTCCTAGGAA
3' ss Score
9.16
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
AACATCAGATATCAGAAAAAGAGCTACAGTTACAACAAAAAAATAGAGAAATTCAGTCTCTCCAAAAAGAATTGGAACTCTCCAAGTCTGAGCTGAGCCATCTCCAGGGGCAGCTAGCATCAGAGAGGAAAAGAGCTGAAAAACGAATCTGCAGTCTGAAAGAAGCAATGAAAATGCAGAGGACGCAGTTTGAAAGAGAACTGCAT
Seq A exon
GAACAAAAGCGTGAAAATAACTGCCTGCAGAGTGATATAGCAGCTGCTGAACAAGTAGCACAGAATAACCATGAACGCACCAAGCGCCTCATTAAAGAGCTTGGCCAGATCCAGCAGGACTACATGGATCTCCAAAACCAG
Seq C2 exon
GTTAAGACTCAAGAAGACCTGGAAAAGAGACAAAGGGAAATAGAGAACACAGCAACATTGCTTAAACTAGAGGTTGAAGATGATATTAAAACAGGGTTTAAATCTTCAAGCCCATCTTCTCCAGAACTGTTGGAAGATTTGGAAGCGTTTTCTGCAGTAAATAAAAGTCTGCAGTGTGAATCTGACAATTTAGAGGAGACGTTTTCATTTGCTGATGCTGACAAAAGAATGTTCTCATCGGAAAAAAAGTTGGATTTTTCTCAAATCTTCATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=0.787 C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTCTGAGCTGAGCCAT
R:
ACAGTTCTGGAGAAGATGGGCT
Band lengths:
256-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]