RnoEX6016577 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14364514-14368263:+
Coord C1 exon
chr3:14364514-14364719
Coord A exon
chr3:14365706-14365846
Coord C2 exon
chr3:14368000-14368263
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCCCTCTATGCTAGGAG
3' ss Score
8.9
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
AACAGCAGCTTTCAGAGCGGGAGCAGCAGCTGATGGAGAAGTCGGGTGACCTGCTGGCCCTGCAGAAAGAGGCCGATGGCATGAGGGCAGACTTCAGCCTACTGAGAAACCAGTTCTTAACAGAAAGGAAGAAGGCAGAGAAGCAGGTGGCTGGGCTGAAGGAGGCACTGAAGATCCAGCGGAGCCAGCTGGAGAAGAACCTTCTG
Seq A exon
GAGCAGAAACAGGAGAACAGCTGCATGCAAAAGGAAATGGCGACAATTGAACTGGTAGCCCAGGACAACCACGAGAGGGCCAGGCGCCTCATGAAGGAGCTCCGTCAGATGCAGCAGGAATACCTGGAGCTCAAGAAACAG
Seq C2 exon
GTGGCAAACCAGAAAGACTTCGAGAGGAGGCAGATGGAGGTCAGCAATGCAATGAGGACACTGAAGTCTGAGGTGAAAGACGAAATCAGAACCAGTCTGAGGAATCTCAACCAGTTCCTTCCAGATCTACCAGCAGATCTCACAGCTATTTTGGAAAGAGATGATAACTTAAGAGAGCTGGAAAGCGTGAAAGAGAACTTCCCATTTACCACAAATGAGAGAATTTTTGAAGAAAAATCCAACTTTCCCCAAGTTCACATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'53-82,'53-78,55-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.532 C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTGATGGAGAAGTCG
R:
GTCCTCATTGCATTGCTGACC
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]