MmuEX0010881 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35171838-35175372:+
Coord C1 exon
chr2:35171838-35172043
Coord A exon
chr2:35173017-35173157
Coord C2 exon
chr2:35175109-35175372
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCCCTGCATGCTAGGAG
3' ss Score
8.02
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
AACAGCAGCTTTCAGAACGGGAGCAGCAGCTAATGGCCAAGTCAGGTGAGCTGCTGGCCCTGCAGAAAGAGGCTGACGATATGAGGGCCGACTTCAGCCTCCTGAGGAACCAGTTCTTAACAGAAAGGAAGAAGGCAGAGAAGCAGGTGGCCGGGCTAAAGGAAGCACTGAAGATCCAGCGCAGTCAGCTGGAGAAAAACCTCCTG
Seq A exon
GAGCAGAAGCAGGAGAACAGCTGCATGCAAAAGGAAATGGCTACAATTGAGCTGGTGGCCCAGGACAACCACGAGAGGGCCAGGCGCCTCATGAAGGAGCTGAGCCAGATGCAGCAGGAGTACCTGGAACTCAAGAAACAG
Seq C2 exon
GTAGCAAACCAGAAAGACTTGGAGAGGAGGCAGATGGAGGTCAGTGACGCAATGAGGACGCTGAAGTCGGAGGTGAAAGACGAAATCAGAACCAGTCTGAGGAACCTCAACCAGTTCCTTCCAGAACTTCCAGCAGATCTAGCGTCTATTTTGGAAAGAAATGAAAACTTAAGAGAGTTGGAAAGCTTGAAAGAGAACTTCCCGTTTACCACAAAAGAGAGGATTTTTGAAGAAAAATCCAACTTTCCCCAAGTTCACATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'78-99,'78-94,82-99
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.511 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTAATGGCCAAGTCA
R:
GTCCTCATTGCGTCACTGACC
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types