MmuINT0034562 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35171838-35173157:+
Coord C1 exon
chr2:35171838-35172043
Coord A exon
chr2:35172044-35173016
Coord C2 exon
chr2:35173017-35173157
Length
973 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTGCCTCCCTGCATGCTAGGAG
3' ss Score
8.02
Exon sequences
Seq C1 exon
AACAGCAGCTTTCAGAACGGGAGCAGCAGCTAATGGCCAAGTCAGGTGAGCTGCTGGCCCTGCAGAAAGAGGCTGACGATATGAGGGCCGACTTCAGCCTCCTGAGGAACCAGTTCTTAACAGAAAGGAAGAAGGCAGAGAAGCAGGTGGCCGGGCTAAAGGAAGCACTGAAGATCCAGCGCAGTCAGCTGGAGAAAAACCTCCTG
Seq A exon
GTGAGTGTTTGCTGCCCTGGGAGTGTAGGGAAATCAATACGTTTACCCGACTTGACACATGCATTTTTCTTATACACAGCTTCATTATGAAGAAAATAAATCATCCATCAACCCAGGCCCTACCCCAGTGGTTATTATTGGTGTATTTTGTCATAATTGATTGTTGAAGCACACAGTGAGTCTTGGCTGCCAGCAGCCATCCTGTGGACAGCACAGCACAGTAGGGAGCTCTGCCCTCTGCTCAGCCCACTGCAGGCTCTAGGCATTGGGTTGGTAGGCACCTTTGCAGAGCCTCAGGCAGCCTGTTTGTGGCAATCTGCCCTTTTTGTTCAGCATTAATTTTTATCAAGCGTTAAAACCAGGAAGCCTGGTCTACCATGCTTTTACCCATGACCTAAGGGGTGGGGTGGTGATGACATCAGTCAGAGCAGTGTGCACAGTGTTTCCAGGAGTGGCTGTTTCCAGCGCTCTCTGGAGGGACTAGTAGAACTGCTGTATGAAGGAAATCTGATGCGTTATCAGAAGGTGGTGTGCTTTAACTAGGACTTGGGCAGGATGATCGGAAAGATAGATTTAAGCTGGCCATGGTGGCCCAGTCCTCTAATCCCAGACTCAAAACCAGAGGCTGGAGGATCTCTGTGAGTTCGAGGCCAGCCTGGTCTTACAGTGAGTTCCAGGCCAACCAGAGCTACACAGTGAGACCCTGTCTCAAATCAATAAATGATAATCCCTACAGCCCCTGAAGGATGTTGCCCTTTCATGGGTCACTGATGGGGCTGAGGGAGGGGAAGGTGACTTGTCAGAGGTACTGCTAAAGATTTGGCTTCAAACACTGGATTCAAATTCTCCCAGTCACACTACACCTGCCTCCAGAATGCTCCATTTCACAGTTGTAGAAACTGAGGTCTTTACATTGCTGGTGAGTGTGGAACCCGTGTGTGTCTGCAAAGTCCTTTGCCTCCCTGCATGCTAG
Seq C2 exon
GAGCAGAAGCAGGAGAACAGCTGCATGCAAAAGGAAATGGCTACAATTGAGCTGGTGGCCCAGGACAACCACGAGAGGGCCAGGCGCCTCATGAAGGAGCTGAGCCAGATGCAGCAGGAGTACCTGGAACTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCAGCTTTCAGAACGGG
R:
TCTTGAGTTCCAGGTACTCCT
Band lengths:
342-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types