GgaINT0126702 @ galGal3
Intron Retention
Gene
ENSGALG00000008936 | F1NV60_CHICK
Description
NA
Coordinates
chr17:1319663-1320237:+
Coord C1 exon
chr17:1319663-1319813
Coord A exon
chr17:1319814-1320077
Coord C2 exon
chr17:1320078-1320237
Length
264 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
CTCCCTCCTTCCCTTGGCAGGGA
3' ss Score
11.31
Exon sequences
Seq C1 exon
GATCTGGCATTTCCAGCTATGCAGATAACCCCGCTGGAGCTGGAGCCAGCCTGAAGCCCTGCCTGGCCAAGGCCATGACAGTCATCCCTGCGGAGCAGCAAGGGGAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
Seq A exon
GTACGGGCACTGCCTGCATCCCTGCACCCCCACGGCCCTGCCCTGAGCCCTCAGAGACTGCTCTCCAATCACAGCTGCAGTGGGTCTGGGATGTGGGTGAGATTATATTGCGAGGTGAAGTGGCACTTTGCCACCCCGGCTGGTATCTCTGGTGTCTGATGTCGAGCCTTTTGGGGTGGGGAACCAGTGACTTTATGGTTCCACATCACGTCTGCTGCCAGCACCATGCTCCCTCCACCAGCATCTCCCTCCTTCCCTTGGCAG
Seq C2 exon
GGAGCAGAACAGCACAAAAGCTGAGCAGGTCTTTGCTGAGGTCAGCAAGGCCATTCGTGAGTTCCCTGTGGACTTCCGCGGAGCTCAGATCCTCACCGGGAATGAGGAGGGCTCCTTCGGCTGGATCACCATCAACTACCTGCTGGAGACACTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936:ENSGALT00000014522:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.6=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTATGCAGATAACCCCG
R:
AGTGTCTCCAGCAGGTAGTTGA
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]