GgaINT0127078 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7946534-7947067:-
Coord C1 exon
chr18:7946965-7947067
Coord A exon
chr18:7946626-7946964
Coord C2 exon
chr18:7946534-7946625
Length
339 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TTCTTGCACATTTGTTCCAGGAG
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTCAACGGTCTGCGCAAGGAGTATGAAGACAAGAGAGCCTGTTCCATCTTTAAGAAAAAGAAGAAAGTTGCTGTCAAAAATCTTTCATTTTGTGTTAAAAAAG
Seq A exon
GTTTGAGTACCTTGCTGAGCCTCCCCAGAAACAGCGACCAAACGCGAAGGTCAACTGGAGACCTTGCTTGGTGTTAGAAGTTCCTCGTGTGCTGCTAAACCCAATGCAGGCAGCACTGTAGGGTTGGAACTGGATGATCCTTAATGTCCCTTCCAACCCAAGCCATCCTACGATTCTATCATCTTCTGCCAATCAGAATTTCAATTTACTGGAATAATTTAATGAATACCATTTAATGAATAGATTCTCATACCGTATTTTCAGGGATTGCTTTGCATGCAGAGGACAAGGTCTTAATAACAATTAACACCATTAACGTTTCTTGCACATTTGTTCCAG
Seq C2 exon
GAGAGGTGTTAGGTCTGTTAGGACCCAATGGAGCTGGAAAGAGCACAACTATACGCATGGTTTCTGGAGACATAGCAGTGACTGCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000522=ABC_tran=PU(7.6=66.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACGGTCTGCGCAAGG
R:
CACTGCTATGTCTCCAGAAACCA
Band lengths:
183-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]