GgaINT0127234 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1733336-1738930:-
Coord C1 exon
chr18:1738828-1738930
Coord A exon
chr18:1733372-1738827
Coord C2 exon
chr18:1733336-1733371
Length
5456 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TGTTTGTTTGCAACGAACAGCCC
3' ss Score
2.61
Exon sequences
Seq C1 exon
AGGCGAATCTGGTGCCGGGAAGACTGAAAACACTAAGAAGGTTATTCAATACCTTGCTCACGTTGCTTCCTCCCACAAAGGAAGAAAGGACCATAATATTCCT
Seq A exon
GTAAGTTGGGAAATCTTCTCTACTGTTCTTTATTATTGCTTCTTTGTTGTTCTTTCATCTTCAGTTGAAAATAAAAAAAATTAAAGTTAATTTTAAGATGAGCTGTAATGTAATCCATGCAACTTTGATCAACTGTTTTCTCTTTAGTGGCTGAAACAAACAGCTAACAGTGGCATTTCCATTTCACATCAGCTATTTAACTTCCATGAGATTATAGGCTTTATGCAGGAATTACTATTAGAAATAGTATCAAAGCTTTCTGATGCAATAAATCTCAGTTTTCTAAAGATATTTCATTAGCATGAACAGTTCCTAGTGGACTTGTTTCCTATTGGATACAGTCTTTAGTACTAGCATATGTGAACAGGCTTTCATAGTATTATAGAATCACCAATGTTGGAAAAGACCTCCAAGATTACCCAGTCCAACCATCCACCCACCACCAATATTTCCCACTAACCCATGTCCCCCAGTACAACATCTGAATGTTTCTTCAACACCTCCAGGCACAGTGACTCCATCACCTCCCTGGGCAGCCCGTTCCATCACCTGACCACTCTATCAGAGAAGATACTTTCCCTAATATCCTACCTGAACCTCCCCTGCTGCCATGTGAAGTTATTCCCTGTCATCCTATTGCTAGTTACACATGAATGGGCTGAAATATCTGTTAGTATGAGCACTTGGAGCACTTTGCAGTCAAGTATTTCTTTAACTTGACTATAAGACAAGTGGGTAGCTCTCATCTGTACTGGTGTCTGCATGCCTTTCTCCAGGAGTACCACAGACATCTCTGATGGTTGAAAGCTTTCAGGGTACATTTTCTGGCTTAACAGCACCTCTTGCAACTTTCCAAGTGCACAGCACTAAGCACTGGGATGCTCAGAGCTCTCAGTCTTCCTGTGTGTCAGGACTCACATTTCTGGAGAAACAGATGTTGAGTTGAGATGAATTTATAAAGAAAGGAAAGCCAAGGATTTGAAGGGAGAGAGATAGAAAGAATACTTGGCAGATAGATTTGGAGAAATCTAGTTGAAAGCAGGGGGAAACTTGAATCTTTCCATTACCTGAAAGCAAATGACATGGCCCTGTGTTACTGCTTGTTCAAACTGCTGCTGGGTTATTGCACAGAAAAAATCAATGTTAGTCTTTGTCAAGATATGTCATGCAATCTGAATGGGCTGCAGGTTGTCTCATCTGTCCCAGGCCTTAAAGGGAAGTCTTTGCAATGGAGCACCAACAGTACTGGACAGGTGTTCATACATTACTTACTAGGGAGGTGTGTGGGTTTGCAGAAGGCTATTTAGGATGTCTTCCATCAGACGTGGTTTTCTACATGGTTTCTGGCTTGTGGATATTATTGGCTTTCCACTGCATAACCTTGAGCAGAACCTGGACCTTTTACTATTTCTGCATGAGTAAAATTGCCCACATCTTTCTGGGGGTGCGTGAATTATGCAGCCTGGATTTGTAACAGCTATTCTTAGCTATGCTGTGATAGCTTAGGGTGTCTCTGTTCAAAAGAGACTTCTGGAAGCCTCTTGCCCAGCTGCTGTTTTGAATGGGTCACGCTTGTAAGTTAGATGAGGTTGCTCAAGGCTCTGCTGAGCTGTTTTGAAAAGCTCAAGGGATGGGGATTACACAGCCTCTGTGGGAGCCCATTCCAGGGCCTGACCACTTGGAGCCTCATTTCTGATGGTATAAAAGAGATTCGATATTGGCCTCGTTTGTGCTGCGCTTCCACTTTGTGCCAGGATATTTGCTCAAAGAAGCACCCCTTTGTCAGCATAACAATTCCTGTGGCCACTCACTGGCTTGGAAACTGATTTAGGCTCAGGCTGTGCTCTTAATGTCAGCCTGGCTTTAGCTGAGAAGAGTATTTGTATGAATTGAGGGGATAGAGGGAAAGGGGTAAGCTGGGGTGCAATGTGTCAGTGATGGGAAGGGTGAGTTACCTTCTTTAATGCAGCGTTGACAAATTCAGTTTAAACCACAGTTCAACCAGGAGTTTAATTTCCTACTCCCCATGAGATTGTATGGGTTGGTGATGTTCGTCCCCAGAGTTTTGAAGGTGGCTGTTGTGATTGGCTGCTTTGTGAACCATCGCTGGCATGATGGAGACTGAGAAAGCTTTTATGTCTTAGTAGTTTTGCCCCCCAAAAAGGAATAGGTCCTGAATGAAAGTTGCATGTTTTGATTGTGTACTTCATTCACTGTTGTGCCTTACTGAGCACCAAAGTAAGTATTTATGAAACACACAGACTGTATAACCAAAACAGTTTTGAAAATGAATTTCCCCTTCTGTAAATGAATTTCCCTTTCTGTAACAACTTGTTTTTACTTACTGACAACACCCAACCTACACAGCTTACACCCAGAAGTTCATAAGGGTCAGAACTGGAGTTACATACGCAGCCCCAATTTGTTCCTGTTGACATATTCATTGAAGACTGCAGAGGTTCAGCAGTGATCTGCAATACTGCTCTGTACAACACTTGTGTTCTCACAGAGAAGATGCTAAATAAGCTTGTTAAATAGACTGCTAGTCAGGGATTTATTTTTATCCACCCTCATAAATTACTGACACGCTTATTAGTGAGATGTCTGAGTTCTGCATGGATTTTTTTTATCAGGCACTTTGCACGCTGATGAAGGAATAGTTATTTTCCCAGTGCTGTTCTAGAGTTACCTTCAGCCTGACAGATAGAATGTTGTAAAGATGTTAGAAAAACTCAGCTTCCCATTGGGCACCTCAGGCCTTACCAGAGCAGTGCTTCAATTTCTACATCACCAGGTGCATTCCTCAGGAGCACACGTGAGAAGCAGCACGTAGAGCTGTACCTGTCACTTGGAGGACAGCATGGCTGTGTTTGGTATTCAGAACTTGGCTGTGAGGCTTTTGCTTCCCAGCAGTGCTCTCCTGTGCCCCTGCAGTGGGCTGGGTGAGGTCCCACTGTAGAAGTTGTATTAACTGTGGAACATGGCTGAGCTGGATGAGATCGAAGCAGTCCCTTATCTAGGAATGGAGTGGTCTTTCTAGAGACACATGAGAGAGGGAGCACTAAAAACATAAGCTTGTCTAAAGGCTGAAGGTGGGGTGGCAGTGAGCCTGGATCCTTCTCCCCAGTGAGCTTGGTTGAGTTTCACAAAGGGCACATGAGCTGCCGGGTTGTTGTGCAGCAAGGGAGGAAGCTGGAAGGTATTTGTTGACATCTGAAAACTTCACATTCAACAAATCTGATCTCTAAAGACTGTGGGAGAGGGGGATGTTAAGAACCTTGCAAGTAAATCTGATTCATGGTTTATTCAGTTGCTAACTGTGCCACATGTGTAGCAGCCTTACAAAGAGTCATGGTGCTTTAACTGCTGTCTCAGCCTGGAGGTGACCCACGCTGTTATCTCCTGCTCTGGCCAGCTGCCCCTGGGCCATGTGTAGCACCTCCTTGCTCTCAGTTATTTTTCTGGACAGTCAGAAGATGTGGAGATGATATATTTGAAATGAGAAGAAGAAAAACAAGGTTGGGTAACTGGTGAGAGTAGGGTGGGAAACTCATGAGAGAGGGTTTTGAACAGATTGAGAAAGAAGGCATGGACAAAAAGGAGAGTTCTGTTTGGCTTTGTGACTCATCACTCACCAACGTACTGGGGGTAGGAATAAGAGAAAAGAGTGGAATGTGTAACACATGTATTAACAGAGCTGCTTTACTGTGGTTGTGTAGTGAGCCCTAATTCTAACTCCTGCATTCTGCTTTGGTTTACAAACACCATGGGTTTATTTGCTACAAAATACAGAAATAAAGTAAATTGCATACCCAGCTTTCCAAAGGGATGACAAAAGTGCTGCTTACTGCCCAGGGATCACTACTAACTTGCATGTACTGCAGGCTCCATGGGGTTGGGGAATGCTGCCTATGGGCAGATCTGGACCCTATTTGTGGTCAGGTATTTGTAATCAGCAGATAATGTAATACCAAGATTGAAAATAAGTAGCTGCTTTCTGTTAATGACATCCATCACTACTGACTCCATTTCTACTCATCTGAATCAGAGCTGGACAGTGCCAGGGTGAAAGGAATGTCTGCTTTCTTTCTTCGCCCTGTAACCAATACAAGACCTCTGTTTTCAGTAAAATCCAGCTCTCGTGCTGATACTGCTGTAAGCCTCAGAAATAGCTATGATTACTTAGTTACCTGCATTGGCCTTTGAAGGTGAAATGCAAAGTTGTTTAATTTGTTTCCTTAAATTCAGAAGAGATTTAATTGGTTTTGGAGTACAGGACCTTGGGTTGGTTGGCTCAGACCGAGACTCCCCGTGATGAGGATTTCCCAGATGTGCTCTAACTGCCCTAATTGAATGGGAGAAGTTAAGTGTCTGTCTGATGGTGCTCAGCACTGTTCCTAGTGAGGGAATGGAGACCTGGAGAGAGCAGTGCAGTAAGCAGAATGCCTCTGAGGTGCATCTGTCCTTTCCCACTGTCTGAGGACTGCTGGTCTCAGACTGCAACACTGAACCTTATTTTCAGATGCCAGAGTTGTTTTCCAAGCAGGAATGATTCAGCTTTACTGAATTCACACCGCTTATCTGAATGAGGTGAACTTCTGGCAGCTGCTCTGAGGAACTCTATCCAAGTCTGTTCTCTTGCACTAAAGCACTTCTACAGCTTTGAAATATCAGACGTAGGATACCAAGTATCTGACTTGGTGTGGGGATGTGTTGTACAGTATTTCTCCCCCTCAGGCTCTGTGCCGTGAAGCTTAAGTTTGGCAAACTTGCAGATGGAGTCATGAATATAATAACAAAACTGAAAATGTGTGTTTCTGCAGGAACTATGCAGAGTTGAACTGTGAGGGCTTGTTTTCCATTCAGACCCTCTTTCCTGGTAAAATGTGTAGGTATTCCAGTTTCTTAAGATTTTGCTTCTTATGCTTGCTCTTGAGTGGAAGAAACAAACGTGGTGTTGGTTGGAGGGTCTGCATCTGTTAAATATTCAATGTGCAGCACAGAAACAAAACCTCAGACATCTTAAGGATTGCTTTCTTCATAGGTTCTGCCATAACCTGCTTTATCCTTTGAGGAATAATGATCATTTCATCCATACAAAACCACCTTGCAGGGACTGAGATTGTGAAGAAGTAGTTACTGCACATTATGGGTGTTTATGTGGCAGAACTGTGGAAAACAGTGCAAAACAAATCATGCCATTGCCCTTTTCTCTTGCTGCTGAAGGTCCCTCTGCCATCTTGTATTGTATTTGAAATCAGTTCTTTGCATAAGAACAGGTTTTAGCATTTTGTGCATGCAATGGCAAGTGAATAACTCCCTTTCTAAAACCAAATAGTTTGTATGAAGTGAGTATATGGTTAAACTAAACCTACTGACATGAATAATGTGGGATGTGACTTGCAGCTGGAATGCTTGCTTGCTAACATGTGCGTTTGTTTGTTTGCAACGAACAG
Seq C2 exon
CCCGAATCACCTAAACCCGTGAAACATCAGGCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]