RnoINT0096337 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55332055-55338553:+
Coord C1 exon
chr10:55332055-55332157
Coord A exon
chr10:55332158-55338460
Coord C2 exon
chr10:55338461-55338553
Length
6303 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GTGTGTGTGATGTCTTTTAGGGG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GGGTGAATCAGGTGCCGGGAAGACAGAAAATACAAAGAAAGTCATTCAGTACCTTGCCCACGTTGCTTCTTCACACAAAGGAAGAAAGGACCACAATATTCCT
Seq A exon
GTAAGTCTTTGCTTTGTTGCTCTTTGTCTGCATTTCATCCTAGTATAATATCAGAGACAAACCAGGAAAGCGCAGCTGCTCCATACACTGCTCTGGCAAGCAGCTCCCTGGTCACCCCCAGCCGCCTCCCTCTTCCTTCATTCAGGAAGAGCCAGGCACAATACAAGGAAATCTAACTAGGCTTTCTCACAAGGCAAATGGGAATTATGGCTGTGGCTTGAAGCCCAATTTATAAATTAATGAGCAATGCCTGTGAAGATTTATGTATGTCAACCAAACATTTGTCTGTAAATAATTCTAGTGGTTCTTTCCAGATTACAGAGTACCTATGGCTGCTGCCTATAGCTGCTCAGGGTTGGGGGGGCGGGGTCTGTGGAAGGAATCCATGGATGATAAAAAGATAAAAACACAAAATATGGGCGTCAGTGAGCCTCTCATTTTTGAAATGTTGCTGTAGTTTTGGTAAGCCTGCGTGTGCCAGCCAAACCTGCTCCCGCTGCCCGCCGACTTGGTGCTTTGTGCTAATGTCTGCTTATCTGTTTGTAATGAGCAGCAGGAATCGCCTAAGCCAGTGAAACCCCAGGCAAGTGACTTTCTTTGTGCTTCTCAGTCTTGAGTGCCTGCACTGATTCTGTCTTTGGATAGAGCCTCTCCTAGAAACAAGTAGCACTCTTGGCTCTGAGCGGAATCTGTTCTAAAATGAGAGTTGACGTTGAAAATGTGTCGCTGGCATCTCACTCTTTCACGCGAAGCAGCATGCGCTTGTGCTTCCTACTTGTGTTCTAGATAAATCCGAGCAGTTCCCCTCTTACCGTGACATTGAAATGCATGTTTATGAGTCTTTAAACTTAAGATGATTTCATCTATCATCTTAGGTGGAATTATCTTACTACAAGCACATGAAAACTTGGTTTTGTGCTGTACATTACATTTTAAATTTGGGATAGAACCTTGAAAGTTGGGGACACTACATTTCCCACCTGTTAAGTTTTTATGGCATCGTATAATTTATGTCTGTGTGTGTTTTAGCCCAAAGGCTTCCTTGTTGTATTTAATATTCCCAATAAATTAGAATTTTCTTTGTGCTGGGCTACCTTTTAACCCCAGAATTCCCAACATTGAACAAACCACAAACCAGAGCTGGATTCTATTCCCTGCTTCCCAGGAGTCCTGGAGGAGCAGGGCATGGCTCTGAACATGATCCTCGCCATGGCACAGCAATGGTTTTTGATGTGTTTTCCCCAAGCACAACAATGTTGTTAATCTAAAGCAAGAAGCAGTACTTTTGAGTCATGGCTGATTTTTTTTTTCTTTTTTCTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCCTGATTTATTAATACACGTAGAGAAGATTATACAGAAAAGCTATCACAGGGACAGAGACTCTCAAGTATCTTTCTTAGCATTCAAGGTGAGAGCTCAAGGTCATCTCGAGCTCTGTTTGCCTGTGGAGGCCTGTGATGTTCTTCCTGACTTCCTGCTGTCCAGGTCAGCAGTATAGCTTGGAAAGGTTACCGAAAGAATTGTCATTGTCATGCTATGGGATATGTAAAGACTTTTTGGTAGCTGAAGAAGGACAACACAGACAAGAAACCAGCTTTTCTTTGTGCATTCACGGTGCACTCTACGACCTTTTAATCTGCGCGGAGCCTGAGATAGCATTAAATAAGCAAGATAAGGAGTTAAATTTTCCTCATTCTCTGAAACACAGGAGCCATTGCTATTTACACTTCGTCCCCATGTTGTGTTAAACTACTGGGCATCCCAGTTGTATGTGAGTAGCATGCCACACTTGGATGTCTCAGGAGTTCTAGTCCATCCCTGGAAGCAAGTTCTCCCAAAGGCAGAGGCTGCTGCTTTGAGCTATGCTGTCCCTGCTGGGTTGCACGTCTCTGCATGTGCTGTCTGTGTGCACAGCCCCAAGGCTGCCTTCCCACATTCATTGCTACCTTACCCAAGTTGCTAGTATCTGTGATGTGTTTAAAAATATATAAGTATTGGTTCTTAGTTGCTCTCCAACACCCTGAAGAATATGAGCTTATAAAGTAATCCCTTGGTGCCCTGGTGAGATTGGCTCGAGGCCTCTCCTCTTACCCTCCTCCGCTGACAAAAGCCTCAGATGCTCAGGTGCCATGCATAAAATGGAACCTGTGCAGTCCTCTTGTGTGGTATAAGTCACACTAGAGTGTAGTGTCTGCTACAATAACTGCTGTGTGAGACAGTACAGATAGCTGCTACTCTCCCCTAAAATATTTTCATTTCATTTTTAGTTGAATTTGGGGGTGCAGAGCCTACAGAGGACTGACCTTGCAAAGTCACTATTTGTTTTAGTTTCATTGTTTTTCCTCCCTCTCTCCTTTATTCCACATAAGCGTTGAACTTTGTTGGTCAAATATTGCAATACAGTTCGTGCTGCACAGTGTGCCCGTTTACACGTACAGCTGTGTGCTCATGTCACAGCCACTCAGTGCAGCATCAGCACAAGTGTAGGACAGTTGCAGTTTTTGCCTCCCTACAAGAAACCCCACTGTCCCCTGGTTGTCACCTCCCGTTTCCTCCTGTGCTGGTAACCACAAGTCCACTTTCTGTCCCCTACAGAAAGTGCCTGTTCTGGATATTGTATACGGATGAGAAATGGATGAAAAATGTTTTCTGGCTGTTTTCTTTCACTAAGATGATGTTTTTGAGGTTCAGCCTACATTGTATCATTAGAAGTACAACGTTCTTTTGTCATGGCCTAAGAAAATTCTGCTGAATTAAATATGGCCCATTTCAGTGTCCACTCAGAAGCCGGCAGGCATTGGGTCACTTCTAGTTTGGGCCATTTAGAACATTTAGGCACTTGTTCTGTAGGGACGCTGGTTGACTGCTCTCGAGCACACACCTAGAGCTGGGTCACGTGAAAACAGCAGAGCCATGCCCGAGTTTCTGCATCCTAATCCACCCTTGGCGACGTCTGCCCTTTAGTATAACCACCCAGGCGGTGCAGCTGGTCTTTTATAGCCTCCTTGAAAATATGAACAAATAAAAGAAACACTGGTTTTCAAATTCAAGTTACAAAAGTAAACTTCAAGCAAAGACTTATCTGTGGACTTTCAGATGTGTTTTATAACATAATTGAAAGTTATATTTGGCTTTACGCCCTCGGAGCCACCCACCAGGCAGCTGCAACACAACACCACTGTGGGTTTCTCCTGACAGGGCCTTCAGAGGCCTCGCCGTGTCCATTGCTGCCCCAAGCCTCAGTATGGAGCACTTGAGAATAGATTTGGAAATGACTAATTTCTCAAACTTTCCCTCCACTTGGAGTAATGCCTTCAAGCTGCTGCACCTGCCTCTCAGCCTTCCTTCTTCAGATGATACTGTCTTTCCTCAGCGGCCAAAACTGCCTTGAACGGAGGCAAAGATGACATAGCAGATAGGGAAACCAGACCCTGCTGTCTGAAATTGGAATCTGATTTTCTGCTTTCATGGAGCACTTGCACTTGACCCTGCAAAGTGCAGTGGATCCTGTCCCACACCTCATCTTCTACCAAGACTCTGCTGTACATTGTAGAATAACTCAAGAAAATAATTGTCACCCATGATTGGAAAGCCTTATAACACTAACTAAATACTTAGAATTTTGTAAATGATTTAAATAATGTTTCCCCACCACATCCGTAGAGAACATAAGTTGTTATCTAGAATAGAAGCAAAGATGAGTGCTTGCCTAGCTCTAGTGGGGACAACACTTGTCATTGTTCCCTGGTAGTTTTTAGAGATAAAAATACCATTTACATAATTTCTTGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACCAAAACATAATTTCTTAATTATGACTGTGATAGTAGTTTTAAGATATTTAACTTTGCGTAAGATCTTTCTTGATCTTTCTGATGTCTCAATGTTTTAGGAGAGGAACAATCCCATGACACCCATTAGTAAAGTCAACAGCAGTGACACAGAATGCTAGTCTGCACGGTGACTTTGAAGCTGCAGCCCAGATCTCAGGGCTGCCTTTGGGTCATCCCCACTCCCTTCCCAGGCACTGCTAGAATGTTTTAGGACTTATTATATATCTGCTCAAACATTTGCCTGTGTCATTTTGACCTGATACTGACTGAGATAGGGAAAGGAATCGGTGAAATAAATGTGACCCAAAGAATCCCTGTTGCCATGCCCAGGGACGGGAAACCAGGGGTGTTGTACTTGCCTCCCCTCTAAATTAAGAAGACACCTTAAAAGAGATTGTCGATCTTATGATTTGGAAGGATGGTGTGTGATTTTAAGGAGTCTGTATTTCAGATCTCTGTTTCGTGTAGGCAAGCACTTACCACAGCATTAGTTTCCCTGACAATTTCTGCATTTCGACCCCACAAACTGAATTGAATAGCAAAGACAAGAAGGGGCCTTTGGAGGGTCATACAACGAGTGCAGAATTAGTGTGCTACAAGCATTGCAAGGTCTCAGTCACAAACATGTTGATGGAAGTGACAGCTCACAGTCTCCCCTGTCCTCCCCCAACCCTGCAGTGTTAGGGATTGAATCCATGACCTTGCACATGCCAGGCAAGCATTCTGCCTCTGAGCTACATCCCAACTCCTTCCAGACTTTAGTAATAATAGCTCTCAGTAATCTAATTTAGTTCAGGATTCCAAACATCTTTAAGAAAAGTTCGTGGCTAGGAGTGGTGACACAGGCCTTCAATCCCAGCAGTCAGGAGGCTGAGGCAGGTGGATCCCCGTGAGCCTGCCTGGTCTTCATAGGGAGTTCAAGGACAGCCAGGCCTACACAATCAGACCCTGTCTCAAAGGAGCCAAAGAAAAGGAAGGAAGGAAGGAAGGAAAGAAAAAGGGAAATTGTTAGCATACAATATACAGAGATTTCCATAAAACAGTTTTAAACTGAGAATCACTGTAGAGAGTGCCCTGGGCATCTTACCTAATGCCCAGAAAGTCAGGTGATACTAGGCAGTGAATTACCAGGAGCAGTCCTTGACTGTGTTCAGCTGAGAAAAGTGGTAGACTGTGGTTTAAGGCCTGTGAGAATCTGGGCTGCCCAGATAGACATCAGGCGCATACCCCCATGTTTTGTGGGTGCCTTGGGAACACTGCCCTGCTCTTCACACTTCATCACATCACAGAGTCCCCACCAGGAGGAGGCGGAAACTATGAGGTCTTCAGTTGGCTTTGTTGATGCCCTAGACCCATGAACAGTGAGGTAATACCACAGCGTGCATTTGTTCCTGTTTTGAGATATGATAGTGGCACTTGTCATGCATTGCTTGATGACCACTAATTTACAAACCCAACATGGTTTGTTTGTTTTTTTTTTTTGTTTTTTTGGGGGGGTTTTGTTTTGGTTTGGTTTTTTTTGTTTGTTTGTTTTGTTTTTTTGCTATTGGTTTCTATTTATTTATTTTTAGGTCTAGAATATTATGGGCAATTCAAAGTACAGGGATAAGATTGGGAAAGGGAGACAGATTTATTTAGATCATAAAAGATAATTCTGAAATTGCAGTCCCCAAACACAACATCAGTTTCTAATGTTTTTCTTGGCCAGGCCGGGCATCAGCTTTTGTGCAGCTCTCTGTTGGGCTTCATGCACTTAACACCTCTCATTTGTGAGATCTGCCTGTAGCCTAATTTGCATACAAAGATTGGCTAAAGCATACTTTCTGCCAAGTGTTCTACTTCTTGGTGAAGTGAGTGCCTTGCCGTCTTTGCCAGCCTCTGACGTGGAGGTGGAGCGGTTGTCCATCACTGTGTCCACGCTGTGTGAAAGCATTTGAGAGGATGGCAATGTGGTGGAAATTATTCAGTCGGCCATCTTAAATCCTTCATCCAAAGCAGAACAAAAACAACAGCCGCAGTAATGTGTTCTTAGGCCGAGCGTTACACTTGATTTCACTTCATGGGAACCATTTGCCATGTTTTCTTTTCTGCCTCGTTTAAATTGTTATCTGTCCAGCAAGATATTTTCTTCTCCTGACCCCTCTCTGGAAGCTGTTTGCTTTTTTTTTTTCTTTCAGCAGAAGCCATTATCATAAGCAGGAATAGAAGCCAGCAGATGGCACTGATGGCGGGCAGCAGGATGAAAGTGGTGGTGGGGTGAGGGTGTGTTTTTCACCCTGAGAACGAAGTAAAGAGGAGATTAACATATGTCTGTTTTTATTTATGTGTGTGTGTGTGTGTGATGTCTTTTAG
Seq C2 exon
GGGGAACTTGAACGGCAGCTTTTACAAGCAAATCCAATTCTGGAATCATTTGGAAATGCGAAGACTGTGAAAAATGATAACTCATCTCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]