GgaINT0127235 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1729616-1733371:-
Coord C1 exon
chr18:1733336-1733371
Coord A exon
chr18:1729703-1733335
Coord C2 exon
chr18:1729616-1729702
Length
3633 bp
Sequences
Splice sites
5' ss Seq
AGTGTTTTT
5' ss Score
-19.15
3' ss Seq
TGTGTGGTTTTCAGGGGGAGCTG
3' ss Score
-8.13
Exon sequences
Seq C1 exon
CCCGAATCACCTAAACCCGTGAAACATCAGGCAAGT
Seq A exon
GTTTTTCTTTATGCTTTTAAAGTTATGTAGGTGACCTTTATCTCTATTTTCTGTCGATTTCCATTTATCTGCACAAGCTTTCCCCCATGTTCTATACAGCTAATAGTAATTTCAGTAACTATTGAATTGGCTTTGTTGAGAGCATGGGCTGGTGAAGAGCTTATAGGCTCCTGAGCATTGCAGAGCACTGCTCCTCACGCCATGGGTGTCCCTGTCCTGGAGCACTGGGTAACCTCCTCTCGAGCTGAGCTTCTCCAGGGTGCTGTGTGCACACTGAGTTAGTGTGCCATAAGGGAGGACGGCAGTTCTTCGTGCTAAATAAAGGATGGGGATCATTGGAGGTGGCAAAATACTTCTGATTAACATTTGATTTTCCCTGAATGTTTTTGTAGCTGCTCAGGTAACCTGGTCAGAACTTTAGTTCTCAGGTGTGTAGGGCTTGGCTTAGCTGTTTGACTCCAGAAATTGAGCATCCCCATGGCTCACCAAGCTAGGCGGTGTAAGTGCCGTGGTACCTGCCCAACTGAGCTAGCACTGTGAGCCCCAGCTGCTCTCATCTCGGGCTGGTTGGAGCTGCAAGCTCATGCTGCCCAACCCTGTCCTGGGCCAGCAGTCACCCCACTCCAGCTCACCTTGCCATGCTGTGCAGCATTGCTTCTGAGCATCAAGAGGAGAATAAGACGGAAGCTGAGGGTAAGACTGTGGGAAGAAGAGCTTGTTCCCACATATTATGCAAGATGCATGCTCCAGTCTCTAACCTGAGATGGTAAGTGATGCCTCTTTGTCATGGGCACGAGCTTTTTAAATAAGGAGAATGCTTTATAGGAGCTCTGTGTGATACAACCGAGGCCTGGTAACTCAAGAAACTGCCATGAGTTAGGTTAGCTGGTTGCATTCTCCCTCTGTTTTCTGAAAGCTGACCGTAGTGCATCTTAACTCCCTGTGGGGAGGGGGGGAGGGAGGGAGCTCTGGTTTATTGGAGGCAGCAGGAAGCCACACGGACAGCGGTGGTGCCTTTGCCAGTGTGTGGTAACTCCTTAAACCTCTGTAACCCAATCGTGTGTCGGAGCCCCGTGGTCTCATTTTCAGAAGTTACAGACATTCTTTGTATTTAACCTGATCCTTCCTCCATCCAAACCTCAGACAATTCAAAGTTGTGGGTTTTTTCTCTTTACTGAAGAATTTCCTTGTTCCAAAAATAAAGCATTGAGTTAACCCTCCTTTAGCTCAGAGTCAGCGTGCAGTTGAATTGAATTGTTTGTTGGCAGACGTTTGAAATGTATCGTTGGAAACATGCTAATCCAGAAGTGTTGATATTGCATAAACCATAATCATTAACGTCTCTGTTTCGATGTCATTTTGAACTACAGAGTGGACCCCTGTTGTATGTGAGTAGCATGTAGCTCCCTGCTCCCCAGTCTTCACGACGACCCAAGCCACTGGGATGCTGGTGTTTCTGAAACTGAGACAACAATCCGTCCTTATCTTAACGTTGTCCTGCATGATGTATTGCATGACTTCACTTTTTCCACAATTTCAATACTGCTTTTTCCAAGTACTGGTTAGATGCCTATGCTGGAGATATGCCTGTAGACCAAACTTAAACTCTTTCCAAAGCGCTGAATGCTTCCTCAGAAACATTTTTGACTCTAAAGCAATCTATCTAGAAATGAAAACCACTAAATCCAGTTTAAAATGTTCTACCACCATTCTTTTCAGCAGCTATTCTGCACCATGCAAGGTTTGCATGTAGCAGTGGTCACAGAAGGTCCGTGTGTGAAGGACAGCAGCAGAGCTGGCTGGGCTGCAGTCACTGCTTCTCACACTCTGAGGGCATTGCTGAGTGCTTCCTTTGAACCCTCTGAGACGATCATAAAAATGCACCACAAAACTTGCTGCCTTCCACTGGAGGACTCCAGTAGAATGGTTTCATGTTGTGTTGCAGGGGTTCCCATGCACAAGGCTGAATTAGTGCTGTGGTGCACGGAAGCACTTAAAGCATGGACAAAGCATTCTGGAGTGCAGAGCTTTCGGGCAGCACAGCAGTGCTCTGTAGAAAAGCCCAATTCTGAAGTCAGTGTGCTTTCTTTTCCAGAATAGATAGAATTTGAAATGTAAGCTGTGACATGCTTGCTGCGTTTAATATACGTAGTGTGGCTTGTTTCAAGCTGTGTGCAGCATGGTAAGCAAGCTTTTCCTTTTTATTTGGTGTCTGAACAGGAGCTGCAGTGTGGTTGGGAGAGGGAATGGGAGGAATGGTGTCAGCAAATGCTTTTTCCTCTGTCTGACACCTCTGTGTAGGAATCTCTTAAGACTATGAACTGCTTATGTCCACACAGCAGCTAGAACAGTGATCTTATTTCCTTCAAACTGCACATTTTATCGATTTAAAAGTCCTCCTAAGGGCTGTGATGTTGTCAGCCCCAGCTGTGGTTCATTGGCACTGTAGCCTGAGTGTGCTCAGGGCTGATATGCGTGCATTTGGTTTTTCTCAGTTCCTTTGGAGTTCATAGAATATGCAGTCCCAAAGGAATGTTTGGATGTAACCAAGCTCTGAGCAGATAACGTGAGGTCGTGTTAGAAAGCAAACAGCCATTTGTTTCCAGAAGGACTTGAAATATAATTGAATATTAAAAATGCAAGTCTCAGGTGTTAACTTGTGAAATTCCTGTGTGAGAATCTGCCTCGTGGAGGTCTAAAGAGACTGATGTTTCCATTCCAAATTGCTCAGTGTGGGGCCTGTATTCATCTACGCTATAAACAATTGGAAAAAGCAGGTTTACCAACACAAACTTCAGTTTTTGAGATTACATCCCAGAGAGATACAGCTTCACTTCTAATTTTTTAAGCTATCTTTTAAAGCAGGAAAACAGCGTCATACTTTCCTGTGTGCATCCATGCCTCTTGGGCTCATGGAAGCAGCACAGACTTCTTTTGTTAGCAGAGCTCCTCGTGAGCAGCAATTGTGAAAGCTGTTGTGCAATTTCCTTAAGATAAGTGCTTTGATTTCCACATCCATTGGCTCAAGCTGAAGGAAGCACTTAAAATATGTATTAAAGATGCCTAGCAATTTTGGCTGAATTGGGCAGTTTGAAAATGATCTTTATTTGGTGCTACTCAATTCCCTTTGAGCCACTGTGACATACTTTTAGGTGCATTCAGGTCAGAGATGTTACAGTGACATGAATGTGTGACTGATGGGAAATGAGTACTTCACTGATTTCAGATTCAATATGGAAAAAGAATATGCTGTCAAATAACTGAAGAGAGTTAAAAGTCTTTAATTAGTTTTTTTTTCCTCTCAGGCATTTGAAGTCTGTGCCTAATTTCATCAGCCCTAGAGGTGAATTTTTCTTTTCCATCTTCAATGATTTGCAACATCTGTTGAGTCCTATTCAGTCACCTCTGTGTGTGTGTGTGTGTTAAACGAGCACAGAGCACATTCTTCACTGGATGGAAGAGACTGCAGAGCTTGCAGTGAGGGGAGGGCTGATAACCTCCTTCTGAAGAAGGTATCGCTGCCACCACCTGGGTAAAGTGACTGTCAAGAAGAAGCAGGATGTAGGAAGCTCTCACCACGTGCCCTGTGTTCACATCCATTTGCTGTTCTGTTTGTGTGGTTTTCAGGGGGAG
Seq C2 exon
CTGGAGCGTCAGCTTCTTCAGGCAAATCCCATTCTGGAATCCTTCGGGAACGCGAAGACGGTGAAGAACGACAACTCCTCTCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.6=100)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]