GgaINT0127308 @ galGal3
Intron Retention
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7188390-7191752:+
Coord C1 exon
chr18:7188390-7188657
Coord A exon
chr18:7188658-7191418
Coord C2 exon
chr18:7191419-7191752
Length
2761 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTGGATGCTTTCTTGCTTAGGTT
3' ss Score
7.83
Exon sequences
Seq C1 exon
ATCTTGAATACCTGATGCATGCACGGCAACAGCTACTAACTACAGCTAAGCGTTGGGATTCTACTTCTAAGACTATTGTAGAATTTGAACCTAATGAAACTACTGAATTGGAGAAGAGCCTTCTTACCAGATACCAAATCCCTCTATCTGCTGACCAGTTATTTACACAATCTGTCCTGGACAAATCATTGACCAAGACCAACTATCAGTCACGGTTGCATGACCTCCTTTATATTGAGGAAATAGCACAGTATAAGGAAGTTAGCAA
Seq A exon
GTAAGTAATACATTTACAAAAGCATATGCTATGTATGTGTTACTGTTCTGTTAAAATGTTGAAGATGGCAACTTTTCTGATTAAATTTTCTGATTAAACCTACATGATTATTTAGAATATTAAGTCATCTTTTTGCTTGGAGATAAAGTTGAATATGAATTTGAAAATAGTGATTTGATGAAAGAGACTAGTGCTTATTTAGTGATGCTCATTTAAAGCAGGTTGTACGTATCAGTTTATGCTTACTGTTGGAGGCACTGAAGTTCTGTTGTACGATGGTTTTCTAATGTATGTATGAAACATATATATATATATATGTATGTTTTGGGCTCTCTATACAGAAAGAAAATAAGTTGTTGTGAAATATGCTGCAGAGCTAGATAGTTTTTGCTAAGTGAATTTTCACATCGAGAATTACGCTCTTGTGCCTCACAGGAAGGCAAAGAGCAGCACACCTGTAGAAATGAAAGAATAAGAAACGCGTTCTGTGTAATGCTTTCCTTTTGAGTTTTTGCTCTTCTTTTTCTGTCTTGTAGATTAGTAAGTTTTAATAATGTTCTTGAAATCTTCTGCTTTGATAGTGTTGATGACAGAAGCATTCTTTTGATCTGGTAGCTGACCCACTTAATTGCAATGAGGCTGAAAGTAGCACACTTTTCTGATCCTCTGTGGCTAAGATCACACACTTGTTATTCTCTAGTGAGCTGCTAGGGTTGCAAGCCTAGAAGTGGGTCTGGAAATACAAATGCAAGGAGGTTGTAATACCTCTGAAGTTGTCAAGAGTCAACATGTTGATGAGCAACTACTCTCTAATGCATTTGTGGATGCATCCTGTAAACCAGTAGGGTTGTCAACATGGTCTTTTCTGACAGGATTGGAATAATATGACTGTCTGCAGCTCAGACTGGAGCGGGATGTTGATCGTGGCTTTGCACTTTCTAGGAAAACAGTTGCAGAGTTTGAGGCCATCTGAGTGGAACTACTGAAAAGTACTGGATGAAGGTTTCAGTGACTTGATAAAGTCCTGAGTTTAGTTATAAGGGAGTCCATTCTGAATGGTCTTTAAAAAGTTTACTTTTAAATTGTGTTTATTCTAATATTTCAAGGGGCGTTTATAAGCATATGCAACATGACTGCATTACAAAATAAAGCAATAAAGGTTAGAGTAAGGGCTGTATTACTGACTCATTTTCAAATGCAATAAGCAAAACAATGTTCTGATCTAAATGCTAGCTTGGTTTTTGAACACTTTGCTGTAGATACCATCTGCTGATGGTTTTAAGAGTCATCTTTTTTTTTTGTTCGTTCAAAAGAGAAACAGCCTATAGTGGTTAGGTTGGCTATAACTGTATGTTTTCCTGTATGAACATCAGTGAGTGTGTGAGGCAGTGTAGCTCCTCCCATGTACTGCATTTTCTGCTTCCAGAATTATAAAACAGGTTTAGCCTCAAGGCTGTGCAAACTCAAAATTTTGACTGATGGGAAAATAGATTTGTTTTCATCATTACTGTATCTTCTATTTTATCGGTACATAAGTACATGTCGTACTGTACATCCTGTCTGAGCTCTGTAGATGTGAAGTTAAAATGAAGTGTGTTGAACTTACCTTTAAGAAAACCTTACATGGGGCTTTGTTCAGAATGGCTTCAGTTGCCGTTGCAGAATTTGGCTGCATTGGCTGTGCATGGATTCTTGATTTATCTGGTATTTCTCTGATTTGATTTTGCAATGAGGAGTCTTGCATAAACTCCTCCCATTAAAAATGTAGTTTGTTGATTTTTGTATAAAAGTCACTGCAAAACAAGGCGAGGAATGGGTGGAAGAAGAAACCTTTGGATTTTTAGTTCTAATCCTGATTTTGTAATTTAACATCTTGCCAGAAGATGTCAGCTTACTCACAGAGAATTGATTATCTGTAAATGTGAGATTTCCTTTAGCACAGAGTCAGTTTATTCATGTACAAAAACAGTAAGCTGTGCCTTGTGTCAGATTGGCAGTAATAATCTTTTCCTGTAGCTTTTACAAATGAAAATTTGAGAATCAGCAGTGCACATTTAGCAGCTTGGGGATTCCATTTTAGGCAAGTTTTAAAAAGTTCTTACAAAATAAATTCACAATAGCACATTGTTGTACCTTAGTATCAATGTAGAGCTCTTGTTTATTGTGTTAAAGATAATCTGTACCTATTCTTTTTTTATTCCCACATTCTGATTTTTAGGAAGCATTTTAATCAATCCATCCAATTTATAGGTATGATATCATGTACCTTCTTCAAGATCTGGGTTATTTCCATCTGTGTGCAGCTTGGGAGAGGTGGATAGAATAAACAAGAATCTTATTCTGTTCTTTTGTATCTCTCTCCCTGAATAATACCTCCTATTGGTGAACATAATGTAAGGTTACAAAGTATTTACATCTTTTTTTACTGACTTGGAACATGCACAGCAGCTCTAGTTCTCCCTGAACTTACCTTGGTCGCAGAGACTTTTGCATTTGATTTAGTCTAGTGAAGGTGGTTTTTATGATTTTATTTCTTAAAGCTTCATCGATATTGTTTCTCTTAGTTGTATGCTTTATAGGCTGACATCAAAAGGAAAGCATGTAAATATTCTACAGCTACATACTTCTGAAGGACCACTTTCGCTATACTTGTTGAAATATAGTTTCATACTCAGAGTGTTGGGCAGTGAACCTTGGGTCTGGATGCATGGGATTTCTGAATCAGTGTTTTCCTGCACTTACTGGATGCTTTCTTGCTTAG
Seq C2 exon
GTTCAACATAAAAGTGCAATTGCAGATTGTAGCAAGCTTCATGCTCACTGGGGTTTCTGGAGGTGCAAAGTATGCCCAAAATGGACAACTTTTTGGACGCTTTAAGCTCACTGAAACGCTTTCAGAAGACACTTTGGCTGGACGGCTGGTGATGACCAAAGTCAACGCTGTTTATTTATTGCCTGTCACTAAAGAGAAGTCAGCACAGACCCAAGGAACCAAAGAGAAGGTTTATGAAGCAGCTATTGAAGAGAAAACAAAGGATTACATCTTCTTGAGGGTATCCAGGGAATGCTGTGAAGAGCTTAATCTTCGGGCAGATTGTGAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439:ENSGALT00000005876:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]