MmuINT0077071 @ mm9
Intron Retention
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107475165-107480630:+
Coord C1 exon
chr11:107475165-107475432
Coord A exon
chr11:107475433-107480296
Coord C2 exon
chr11:107480297-107480630
Length
4864 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTTTTCTGCTTTTGATTTAGGTT
3' ss Score
11.24
Exon sequences
Seq C1 exon
ATCTTGAATACCTGATGCATGCAAAGCGGCAGCTGGTAACCACAGCCAAGCGCTGGGACTCTTCTTCTAAGACTATTGTAGATTTTGAACCTAATGAAACTACTGATTTGGAGAAGAGCCTTTTGATCAGATACCAAATTCCTCTGTCTGCTGACCAGCTGTTTACACAGTCCGTCTTAGACAAATCATTGACCAAGACTAACTATCAGGCACGGCTGCACGACCTGCTTTATATTGAGGAGATAGCCCAGTATAAAGAAGTCAGCAG
Seq A exon
GTATGTTCTCTGAGCACCTCTTCCCTCCGCTCTGCTTTGCTGTCCCCACCCCTCCTCCCTCTCCACCTGCGGCCCCTCCCCTCTTTCCACCTGTGTCCCCTGTCCACTCCTTTCCTTTCTTTCCCCTTTACAGTGTTGATTTTAACTTTACAATGGACATGCTTGAGTGAGGATGGGTGTTAAATAACTGTTTTTCACTAGCTGTGTTTTTCATTTAGCTAATTACCTAATTTAGAAACAGGGTCTTATGTGACATCATGGCTAGCCTAGAACTTACTATGCAGGCCTTGAACTCTCATGAGTCTTTCTGCCTCTGCCTCTTGAATGTTACGGGTACAGACATGGGCCAGCACCAGCGCCTTGGTGCTCTGGATTCTATCTTTAACAGAAGTGCAAGTAAGACTTATGTTTAGTGTGTATGTGTTTAGTGTGTGTGTGTGTGTATTGTATGTTTGTCATAGAACCTTACTGAGCGTCTGCTCTGGGGTCAGCTCTGCTCACTTTGGGAGTATAAAACTGGTCCCTGCTCTTGAGAAGTTTTACAGTGAGTACGGGCCATGCTATGGTATACACCTAACGGGTATTTGTGGAGTCAAAGGACAAAAATGGAAGGGCAAGCCACATCTTCTGAAAGTTTTTTGAAGAGTGAGATGGTTTAGATAGAGGAAAATCATTTGATGATGACATGTCATTATGTCCACCTTCTTATGCTTTAGTCACAGGCACACACCAAGAGCTGAAACCTAAGACTGTCAGTTTAAGAGAAGTAGTCTGAAATGAAAGTGGGAGCGAGTGAAACGATTAACAAGGCCATTGTTATTTGAAAGTACTTTTCTTCTGTTTATGTAAAATAGGATGAATCTTCAAAATTGAACCTCAGTGAGATGAGATTACATTTTTATATCAACTTTTCCTTTTAACTATAGTCTAGCCAATACATTTTTTTCTTCAAACTGACTTATTAATAACGATTCAGAAACTCTTATCCTAAAGGAAAGGCAAACCTCAAAAGTGCATTGTGCTGCTCTGCAGGTCTGATGGGGTGGAAGCTGTCAGAGCATCTACTCATGTTCAGTATGCAAAGGGAGTGTAATGTATTTTCATTATGCTGGGACTGTGTCTTGGCCCTTTTGGGCTGTGCGCTTCTCTCTCTCTCTCTGGAGTCTGACTGTAGAGCCTAGGCTGGTCTTGAACTTGTCAGCCTTACTTGTCAGCCTTTCGCCCTTTCCTCTTGAGTATTATATATATTACAGGTATGTGCTGGCCCATTTATACAAGTCTTTGTTTTGAAGATTTTATTTAGTGTGTGTCTGTGTGAGTGTGGACTCATAAGCGCCCAAGTGCTCCTCTCCTCCCACGCTGGTTTTGAGGCAGGGCTTCTCCTGTTTTGCTGCCATACTGTATGTGAGTGCTCCTGGTCAACTCTCCTGTCTCTGGCCCTCACTGAGACCACAGGCGTTGGCTACTGCATCCAGTCTCTTGAGTGGCTTGTGGGGATTAAACTCAGCTCAGGCACCTAGCACTTTTACCTGCTGAGCTGTCTCCTCCCATTTGTGTCACTCTTAAAAGGCTTGAATTTATTGTGCCTGTAGTCTGAGCTGAAGAAATCATATTTTATTAACACATGAATATGCATGTGTGTTGTTCCCATTATCATACTTTTTTCTTAGGAAAAATGCCACGTGAGTATTGGAATGAGTAGAAGTGACCAGATGCCTGGCGTGATGACACACACTGTTAATCTCAGCGTTTGGCCACTTGAGCTGCAGAGGGAGACGGAGCTTAGTGAAGCCCAGGACAGCCAGGGCTCAGTAGCAAGATCCTATTTCAAAATTTAAAAAAAGCACAACTTACCAGACACTTGGGCCTAGTGCTACACACCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGTGCTACACACCTTTAATCTTAGCACAAAGGAAACAAAACCAAGAGGATCATGGGTTCAAGGCCAGCCAGCAGTTTTTGAGCTAGAGCTCAGCCACACTGTGAGACTTGTTTATAAAGCTTCGGTGTGCAGGAGCTAAGGACAGTGCGCTTGGGCTCCTTGAATTTTGAGAGGCTCTCAGGATTTTCAAGGTTTATTTCTCCCTTAAAAGGAAAACAACTTTAGCCATATGTTGATAAGCATTCAGTGATTCTACCTTGGAGGAATTCCATCCAGTTCTGAGAGATGCAGTTTTTACAGAAATAGGATTTAGGGCTGGAGAGATGGTTCTGAGGCGCTGCCTTCTGTTCCCAGCACCCACATCAAGTGGCTCACAACTGCCCTTAACTCCAGCTACAGGGATCCCACACTTTGGCCTCTGGGAGCCCCTGACACACACATTTCTATCCCCCATACACACAGAATTTTAAAAGTAATAAGTATAAATCTTAAAATCAAAGAAAGAGCCATTAGCTGAAGCTCAGCTTTACATGAGCTTGTGCCGTGCAAGCCTAACTGGCCTGGCTACTCAGTCCACCGGCCCGTGGGCCTACAGTGGATGTGAGGCTGTGTGTCACCCTCTGTGGGTTACCTTGCTTCTCCCTCTGCTGCAGTAGACCAGGCCTTCTCTTGTTACTGGCCTGATTCTTGTTCATGTAGTCGGAAAAAATCTCATGAAACCAAACTTACTGTATAGCTCTGGCATTTGAAAATTGAAATATCACTTCAGAGATAATGAGCTAACAAATGCTGGCATTGGCCCTCCGTGTTTCTTAGGAGCTAGACCAGTGCTTTTACAGTAGTTGGAAATTTTGTTGGCTGTTATTGTGCCTCCTGGGAAGGCTGAGATTACATAGACTCCAGGATTGATCCAGAATGTGGTGTGCAACAGTGGAAAGGATTGTCTCTGTTCATTTAGCACCCTAAATGCTTTGTATTTAAAGTGTTTGAATTTCAAAGTGCTGTTCTTTAAAGGATTCATCTTATTTTGAATTCTGTGTCTGTCTTTTTGTGCATGTGCAAGTATTTGCATGTAAGTGCAGGTGCCCAAGAAGGCCAGAGGAGAGGGGCAGAGCCTCTGGAGTGGGGCTTCATTAGAGTTATCCAGGTTAAAGAGGCCGAGTGGCCAGCGACTTAACCATTAGTAGGAACACACAGTGCCTCCAGAATCAGGGCTTTGTGACAGTATTGTAGAGGAATAGCAGTTGGTGAGAGAGGAACCTTCAGTGTAACTCAGCTTTTAGCATGGACACACGGAATGGTGGAGCCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTTGTAGTCCTGCTATCCTGGAACTCATTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCCGCCTGTCACACACATGGGAGGGGTCAGGGGTTATTTGGTGCTACATGTCTGGGCATGGAGAATGCAGGAACAAAGGCATCCATTAGGGAGTAAGATGAGGGCACACTGGGCTTTGAGAAGGTGTCCGAGTTTGGATGGAAATGGAGGAATAGAGGACAGACGGCAGAAAGCCTCTGGACGTTTGCAGAGGAGGGAGTTTAAAGAGGAGGGTTGCTGCAAATACAAGGGAGGTGATTTGAAGCTTGGACATCACTGTTAGCTATAGAGAGCTCCTGTCAGTCAGCAGTGTATTAGAGGTAGTGCTGTCTCCCAACCCTGAGCCAGTTTTAATTACCCCAGGTCCTTCTCAGTGTATGGAAGGCAGCTCTATTTAAAGAAAGAAGCTTTATCTAAAGAATCATTCAAGACACAAGATTCTAACTATCCTGGACTAGCTTTGTAGACCAGACTGGCCTTGAGCTCACAGAGATCCTCCTGCCTTTGCTTTCCCAGTGCTGGGATCAAAGGGATGTACTGCCCTGACCCCCAAGCCCCTGCTGTGAACGTTTTAACTGTGTAAGCTAGTCTCGATTCTCTGTGATGCCTTCAGATGCATAGTCTCTCATAGTCCCATGCACGTGTGGGTGCATGAGGGTCCCGATGGCTGTCTACTAAAATAGGCTTGGTCCCCCCCTCCCCCCATCATTCCTGCACTAGAGTCAGTTCCTTATACTAACTAGCAAACTTGTATTTCGGTTGTTATTTGTTAGCATTACTGAAAGGGAATGTTACGTCTGGATTCTTTGGGAAAGACTTACCTCGCAGGCACTGACCTGAAAGTCCGCTCTAGCTTTAGTTCAGTGTCTTTCCTCCTAGGTTAGGCGCTATTAAAGTCTTAAGTATCTCAACTATGTTGTAAGTGGTTCTCCTATTAATGTATTCCACTTTATTACTTATAAAGTAGTCACCCATAGTTTACTCAGACTTACAAGAATTATTTATTTGTGCTTGTGCATGTGTGTGTATGAGAGGCAGGGCTTACATACAGGGGTGAGAGGAGTCAGTTTGCATCTTCTACCACGTGGCTACTAGAATGGAACTCAGGATATCAGGCTTGGCACAAGGCACTTTTACTCACTGAGCCCTATCAGGGGCCCCATGCAGTCTTTTAAAAATGCATACCTTCAACGCAACTAATGCTTATGTAACTTGTCTTCAGCTTGGGTTAAAGGCAGAAAGATATCATCTATAGAGTTGCTAACTTGTACAGTGTGGAATTGATAGAGTTTCATATTCCTTATGTTTATATTTGAATTTCTTTGTTGTGTTTTTCTAGTTCTTACAGTTTTGATACTCAAATTAGTTTTCTGCTTTTGATTTAG
Seq C2 exon
GTTCAACCTTAAAGTGCAATTGCAGATTTTAGCAAGCTTCATGCTCACTGGAGTTTCTGGGGGTGCAAAGTATGCTCAGAATGGACAACTTTTTGGTCGTTTCAAGCTTACTGAAACCCTCTCGGAAGACACTTTGGCTGGACGGCTGGTGATGACCAGGGTCAATGCTGTTTATTTATTACCAGTCCCTAAAGAGAAGCTCGTTCAGTCCCAGGGAACCAAAGAGAAGGTTTATGAAGCTACTATTGAAGAAAAAACAAAAGACTATGTATTTTTAAGGATATCCAGGGAATGCTGTGAAGAGCTTAGTCTGCGGCCTGACTGTGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721-Helz:NM_198298:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: