GgaINT0127344 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1050294-1052564:+
Coord C1 exon
chr18:1050294-1050535
Coord A exon
chr18:1050536-1052428
Coord C2 exon
chr18:1052429-1052564
Length
1893 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
ATGTCTTTGTTTTCTTCCAGGAA
3' ss Score
12.19
Exon sequences
Seq C1 exon
GTGTCTGGGACCACATTTCCATGGTGATGGATGATGTCCATGACCTCGAGCAGAGGATACAGAAAGCCAAAAGCAACGTTGAGGAGATCCAGAGCTTTGTGCGGTCATGGGGGTCACCCATATTTAAGAGGAAAGATGGGAAAAAGGAATCACTGCTGAACCTGGAGGACTGCCAGGACCGTCTGGAGAAGAGTTACAGCCTGGTCCAGGAGTCAGGGCTGAGGATTCATTCGCTGATGAAG
Seq A exon
GTGAAGGGGGCTGATGCCCAGGGATGTCTTGTCACTGTGGTTTCTCCGTGTTTCTCTCCTCTACTGAAATTGTCCATAGCTGTTTCACCTTAAAATTAACTCTCTTAACACCTTTGAAAGTTTAGGAAGTGTTAATTAACAATACCGTTGATGAGTGGGCTGGTGTGGTTGTGTGGTGGGGTGTTGCTGACTGGGCACTGCTGGAAACCCAGCTCAGAACCGGAACGAGGGCAGCCACAGCCCATTGAAGGAGTCGTGGCTGTTGTGGAGCCACTAGAGGGGAGTCATGTATCAGGCTTCAGGGTCCTGCAAAGAGGAAAGATCTCCCTTCAAACTATTTACCTGAAAATACAAAGGCAGCTGGCTGCAGCTGACCTTTCTGTTTCAGAATTGTTGTCCCCCTGAGGAAGCAGGAGGTGATGCTGATAGTCCAGGGAGAAGCTAAGCAACAGGAGAAAAGCTGCTGTTCAATACCTTGGAGTTTTCCAGTGACATTGTCATTGCTGAGAGTTTTCTTTGCAGTGCAGGAGAAAACCCAAAGTTCTGCTTCTCACCTTCTGGACTGATGTGCTTTGTGTGGTGGGCACAGCACCTTGGCCTGGAGGGCGATGGGTTTTAGACCCAAACCACTCTTGAGGATCTCCACCTGGCCTTGAGCTCTGGAGAGAGCTGACTGACCTGCTTGGGACACCAAGCTCTTGCTGCTCATCTTACCTTGCTATCTGCAGCCAGCAGACCTCTCACCCATTTCTCTGAACACTGAACCAGGGTGAGGGTTTTGTTCTGCTGCTGTGAGTGTAGCAAGCTCAGCCCTCTCCAGCTACTATCCAAGGGATCAGGGCACCTCCTCTTGTGGCCAAGGAGGACATGGTCTTGTGGTCATAGCAGGAGGGCTCATTAAAACATCAGTTACAAGGGAACTTTGTTCAAAATGGCAAAGACAGTGATGCTTTCAGTCAATTGTTAATACTGAGCTCATTCCTGTGAGGTTCCCTTTCTTTTAGGTGTCAGCTCTCTGCTGCCAGTTTGAGTTTGCAAGGGGCCAGAGCCTTACTCTGCCCTGTTAGGAGCTCAAGCACCCAGCTGCTATGTGTCAAACCGGGAAGTAGCAACTCTGGGCTGGCTACTAACCAACTGGCAGTGCTGTCTCGTGTGCTGAGCTGCCACACCAGCACTGGGGTGGCATGTTCTCCCATGCACCCTCATGTGAAATACATCTGAGACACTCCCTAAGCATGTCTGATGGCCCCACAGCAATGGACAGGGTGGGCTGGTTTCTGCTCTCTGCAGGCTGGACCTTTTTGTTGTTGTTGTTGAAACTGTGACTTTTGAGAGCCTCTGTGGGAGAAGGAGTGCTCAGAGGACATGCCAGGGCCAGCAGCCCAGTCCCAGTGGTGCCTGGGAGGCTGCTGAGAGGAGCAGGGAGTGGGCACACAGCCTGGCTTCATGGGGGATGCAAGGAGGAAACCCAGGAAGGGTGAGTCCTTGCTGTGACTCAGAAAACCCTGAATTTCATGGCTGGGAGCTGACCTGGAGGAAGGGAGCATGGTAAGATGAGGCGGGAGGCTGTTAGCAAACCCTTTGTTTTGTCATCCCAACCATTCTGTAGTTTTGTTGTTTAAAAACCTTTTCTTGAATTTGAAAGCTCTATGATCTTTTTGAGATGTCCATTTGTAGGACAATTTTTGAGCTGTTTCAGGTGACAGAGCAGTTCCTGACAGAAGTAAGTAGTCACCTTTCTACTTGGATGTCTACGAACAACTACCTGGCTTCCAGTCCTTCCAGAAGGCTGGTACCCATGTGCTCACTGGCACGTATCCTTAGCTGTGAGCAGCCCTCTTGCATGACAGGCTCAGCCCTGCTGAATTTGAGGATGTCTTTGTTTTCTTCCAG
Seq C2 exon
GAAAATCAGAGCCTCTTAACTGCAGACCCAGCATCTGATGTTTGGAAGGCTTACGTGGATTATGTAGATGAGATAATCCTGGATGGATTCTTTACTGCCATTGAGTGCTCACTGAAGTACCTCCTGGAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(3.2=7.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGGGACCACATTTCCA
R:
AGTGAGCACTCAATGGCAGTA
Band lengths:
355-2248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]