GgaINT0127379 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1097326-1104324:+
Coord C1 exon
chr18:1097326-1097559
Coord A exon
chr18:1097560-1104063
Coord C2 exon
chr18:1104064-1104324
Length
6504 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATGTTTTTCTTTTCCACAGGTG
3' ss Score
13.5
Exon sequences
Seq C1 exon
GCTCCAGTGAAAGAGTCAATAAGCAAATTCATGGCCTATGTCCACACAAGTGTCAACGAGATGTCCCAACTGTACCTGAGCAACGAGCGGCGGTACAACTACACCACCCCCAAATCATTCCTCGAGCAGATCAAACTCTATCAGAATTTGCTACTGAAAAAGAGAAAGGATTTAACAGCAAAAATGGAGAGGCTGGAGAATGGCCTGGAGAAGCTCAACAGTACATCTGCCCAG
Seq A exon
GTGAGGAAAGCCTGGGGTCATACACTGGTTGTTTGGCTCAGAAAAGGGCTTTACGGACTGAAGCTGTGCAGGGTGGAAAATCTGTGCTAAGTCCTGGCCCTAGACTGACTTGAACTGGATTCCTGGGGGATAAGTTCTGTTCTGTACTGGAGGGGAAGAGGGAAGAAGTATGTGTGTGGTCTCTGCTACTTGGGTGGTGCTAATCCCAAATAAAGGCTCACAGAAATTAAAATGAGATAGGGAACCAGCTGGGTGTGTACATCTTCACATGGTTGTATTCCAGCTGCAGTGGCAAAATAACTTAGAAAATGCAGGAAGATCAGTTGGTTTTGGAATTTCATCCAGGAAGCCTATATTAGCTTCAGCAAGATTCCTGTCTTTTAAATTAAGCAAAGAATCCTTTAAAAATGAAGCCAGTGTTCATTTATCCTTGTGTTATGCTATCTGTCTGTTAGGAATACCAGTGCATGTCTGAAATGTAGATGAGCTGTCCTGAAATCCCCTGCTAAAAGCATCACTAGCATGCGTCTGTGGCAATGACTGGATGTTGTTCTGAGTATTTCACAACCTCTCTTCACTGACTCCAACTGCCTGTTTTTCTCTCCATTTCATATTCTATTAACTCTTATAAATGTTCACTTACTAGCTCCTACCGAGGCAAATGGGTTCTCCTGAAGCTGCTCCAGAGGAGCGCGGAGGTTGCTGTGAGTGAAGGACTAGCAGGTTCACCCACTTTCCTGTGGGCTCTGGTGGCATAAATCATGTCTGTCATGCTCAACAAGTTGTGTGCTTGGTGGGAGGGTGATATATGGGTTTTATTAGCACCTCTCGACTCCGATAGTCTACATCTCACTTCAAGCAGTTGCTTTCTGCATGGCACAGAACAGGTCTTTGAGGACAGGGGGATGGAGCAGGCATATTTCTTGTACCCTCTGCAGGTTTCAGCACCTCCTTAGAAAGAACACAGCTGAGGTTGACCAGCTGTTAGAGGAGACCGCTCGTTGCATCTTGTGAAGCCAGTTGGAGCTGAAAGCATTTGCCCTCACTGTAAAGCAGGCCTTACACCTGCCTTACTTACTTACAAGTAACTGCCTTATTTTCTTACAAGTAACTGCCATGACATGTGGGATGCTGCCAATTTTGCTGATGCCACAGCAGTGGACAAGATGATTTAGATCTGTTCCTCTGTCAAGGGCAACTAAGATAGAACAACAAGTCCTGGTAGTGTTGGTCAAATGTGGGGACCTTCCTGTATGCTTCAGGAGATGCTTATCTCCATGTGGGTGTTGTGTTGGCAACGGCTTACTGACATGGGAGCTGAGCAGTGGGGGAGGACTGAGGATGGCATGGGAAGCCAAGCACCTGTGGGCCTTCTCTCTTGTAGGTTTTGGTGTTGCAAAAAGAGTGAAGGAACACAAAGCTCATGTCTGCTTGAGCAGAGTAAGGAGTAAGGAATAAGGCTGGGGTGAGAACTGCCTATTTGTGAAGCTGATTAAGGTGCAGAACAGTCAGGACAAAATATGTCAAATTAGTATCTAAAATTACCACTGGGGGCCTAAAATTAAACACCTAAATTATCAGATGTGCGTAACAGTCAAAACTGCTGTTGACTTGAAATGAGAGTGTAGATATTTAGTGTTACTGGAAATCATACTGGGAAGTTCGATCTTGAATATGGCTTTAAACACCTGAAGTTTAGCATTCACTCATGCAAACATCTGGGCTTGGTGCTCAGGTGCTGTCTGCAGCTTGGTGGTGCTTGGAGGTGGCATGCTGTGGTTTTGGGTGTCCAAGGCAAGGAAGGAGCATTGTGATACCTGGGTATGAACTGGCTGTGCCATGGGACTGAGGACTTGTGCCCCCCTTGTCTCTGCTCTAGGCTCCTACGTGGGCACAGGAGCTAGTCAGGAGTTCTCTGTACTTCTAGACACTGTTCTGTGTCCCCCCGGAGTACACTTGTGCAGGTAGTTATTACACTCTTTGACTTAGCCAGTCCAGTTTCAGAGTAACCTTTCCCCTTCCTTTTAGTCTCCTTTTCTTTTGGTCACCAACTTTTCTTCTAGGAAAATGTTTTTTGTTTGCTTGCCAGCCTAACCTCCTTTCCATGAGGATGCTGGTTGTCATTCTCTGTACTCAGAAAATCAGAAGCTGGCTTCCAGTTATTAGGACATAACGGACTTGGGAAGATTTGCAAGATGAGTCATTTGTTTTTCAGTGGTGTTTGCAATGAAGAGGTCAATGCTCCACTCAGAGCCCATTGCTGAGTAATTTTGAGGATGACTTTGGTTAATATTACAAATCTGGATTCTAGATTCAAGTCTTGCTTGCTCTATCAATTAATTGCTGACCTTTGTGATGTATTTTGTGTTCTTGAAGCAAGGCAGGGACAATCAGATAAAATGAGTCTCCTGGGAGTCTGCCCTCCGGTTTTTCTTTAATAATAATTCTTCTGTCTGGGTGGTAGGCAAGTACTTCTTCCTTCCCTGGTGGAGTCACAGTACATTACCCTTGAATCTCTAATTTGCTTTATTCTTTCCCTTTCCACCTCACATTACTAATTGCTTATCAGCAACTGTCCTGGGCTCAGGAAGCTGCATGTTTTTCACATTTCTTACCACAGTTTGAGATCTTTTGTGTCCAGTGGTGGCATTCAGTGTACTAAGACACATGCAGGATCTGTCTGCTCACACCTTGATACGGTCATTATATTACTGTTGCCCATGGGAATGAGGTTAATAGCGTTCTCTCTTTGCCTTGGGATAATTGTCTGCTGTGGTTTCCTGTGCCACTTCTGTCTCCCTTTGTACTGTCACCCTCGTGTAATTCTTGCTTTTTCCTCCTTACCAGCCACATGTTACTTAGAGGGAATCTTCTGCTTTCACCAGTGCTGGCAGACACTGGAAAAGACAGTGGTGTTTGTCTTATCTTCCCTGGAGGTGGCTATGAATCTCCTGGATTATTGCTTATAAAGCACATCTCACATTGCTGCACCATTAGATGTGAAGGCTCGTGCCTTTCAAGAGGGCTGAATGCCCAAACCCATGCTCTTATTCAAAACATGAGGCAGTCTCTTCCTGCCCTCTATTTTTAGCAGCTCTCTGTAGTCCCAATGTATGTGCCTGTGTCCACATTGCCCCAGGCCTTTTAGTGCCTTCCTGGGCTCTGTCTTGTAGGCTGTGGATTTCTGATTTTCAGCCTTTTCATCCCATTGAGTGTCCATTGTTTCCTTTGTATGGAGACCAGATGACTCCTGGCTTCAGTCTCCAGAGTGGCTCTTATTGTATGGAGACAAACAAGAGGTTTATCTCCATCAGCCTTCATCCTTTCCATGCAACACCTGTTCCAAGGAACTGGACTCTGATATTTTCTGTGCTCATCTCTGTTTGCATCGTGCTGTTTTGTGCATCATGTTGTTGCATTCTGGATTGTTGTTTGTAGACCCGAGCAGGAGCCCCAGGGAGCTCACCCAGGAATGACCAGGGAAATGCAACTTAGAAAGAAGCTCAGAGGATGTGGTTGGCCCTGCCCATCTGAATGGTTAACAATATTTATGTATTTTTTTGGGTGGATGTGCACTAGGTTACCAGTGCAAGAAGGGAGACTGTGAAAGCTGGAGAAGTCCTGGGCTGTGGGAGGGCAGATGGGAGCTGTGCTGGGAAGGCTTTCTGCACACCCCTGGATAACAGGTTTTAGTAATGGTCAGGTTTGGAGATGCAATAGCTGGAAATATGACGAGCATCTGGGTTTTCAAAAAAACAAAAACAAAAGCCTAGCTATCTGCAAGAACTTTTAGGGTGGAAGGTCCTCCCTGGTATGAAAGGGAGGAAGTTTGGGGGCTTTTGTTACCATAAGATCTATAGATGGAGAACTTTTCATGCCTTTATTTCTAGCAGTACTGTGTTGGGGATGGCTCTGCTTGCCGTTGATGGGATCACGTATGTGCTTTTTGCTGTGCCTGTGCCTTCCTGAAGGCAGTGGAGTGAGGTCTCCCAGCAGACCGGGGTCTCCTCGGGTTCTTTTTATGTCTAGGCAGTAGGATGTGCAGGAAGGAGAAATGGATGTGACAGACTGTTATTGCTCTGGATCCAAGTGTGGTATTAAGAGAAACTGTTTGCTGTGCTGAAGGAGTGAAACTGGAGGAGTAAGATCATCCATTTGCCGTTCCTAACACTAGCCCCAGGAAATCACTCAAGACAGTGAGTTTGGTTATGGTAGGCTTTGCTGCTGGTTCTTTCTATCTGCTGGACACACACTCTTAAATTGCCCTCACTCAGCTGCATTTGAGCTTTATCCTCATTGGGAAAATGTGGTTGTTTCCTAGCGTGCTCCCAAACCCTGCTGGAGGTAAGGAAGGCTGCCGGTCACCACTGTCCCCCTGGCATGCTGAGTTCTGCTGGCAGAGGGTCCAGCAGAGTGCCAGGATCCACCCTGCAGCCCCAACCTGCACCGCTTCTGCTGGGGGTTTATCACATAACCCAAACCAGTTGGGCGGGTGACTTGGTAGCACACACTTCTCTGCACTGAGATACTAGGAGCTCTTTCAAGCAGAGCTCTAACTGATCTTCCTGATTATTTTCTTTTTCTTCATTTTCTTTTTCTTTAATCCTGAAAGCAGGCTGTGTCAGGGCATTGTCTGTTCTCACAGTCAGTGCTGAGGGCTGAGTATACATCTGTTCCTTTTGTAGAGCTGTGGAGAGCTTGTGAGGTATAATCCCTTGTTTGCCTTGTTGTGGTCCTGTAAACCCACGGAGCTCCCGGCTGTGTGTGCATCCAGCACGTGAGCACTGATTTGGGGCAGGTCACAAGTCAGATCTGCAATCAGCAAAGCCTCCCACTTCAATTTCCTGCAATCTCAGAAGACTCGGAGCTGCACGAGATGTTGCTCCCTGGGTGCTGACTGGGGGGATTACGTGCTCCCGTGTGTCTGGAGCTGTTGGGATTTACGGGCACATCTTTGTGCTGGTTAAAGCAGCGCGGCAGCCCTGGGCAGCAGGAGGTGGAAAATGAAGTGTGCAGTGCAGGAGTGCAATGAGATTCCTAAGAAACCACTCTCCACTTGAAGCTGATGACAAACGTCAATAGCTTCAGTTTATGTGTGTTCCAAATGGTGCTCTCTCTCTTTTGCATAAAAGCAGAACTGTGAACAAAAACAAGCATCTGACTTCCCTCATGGTGAGAGTTTTTACATGGCAATGCTGTACCCCAGGAGCTATTAACAATCCTTTATGAGCTCAACAGCGGGACAGCAAAAGACTCCGCAGTCTGCACAGAGGCTGTGTAAAGTCATCAAAACGGCTTTTAGAAAGAAACCTGTCCTTGAGTGAGAGCCGGCGTGAGCGTCCCGGCTGTGCAGGTGCTGCAGCCACTGCTCAGAGGGCTTCTGCTGGCAGGGCTCAGCTGCTGCTGGTGTGTGGGTCCTTAGAGCACCCACACTTCTCTGGGCAGCAGTGCCAGGGTCTCACCGGCTCTGGGTAGAGAATTTCCTCCTAACATTGAAGCTAAATCTTCTCTCCTTTAGTTTAAAGCTGTTACCCCTTGTCCTGTCACCACATTCCCTGACACAGAGTCCCTCTCCAGCTTTCCTGTGGGCCCCTTTATGTACTGGAAGACAGCAGTGAGGTCTCCCCAGAGTCTTCTCCAGATTGAACACCCTCAGCTCCCTCAGCCTTTCTTAATAAGAGAGGTGCTCCAGCCCTCTGAGCATCTTTGTGGCCCTTCTCTGGACCCACTCCAACAGCTCCTCATCTTTTGTGTGCTGGGGATCCCATGTCTGGACACAGTATGCCAGATGGGGCCTCGTGAGAGCAGAGCAGAGGGGGACAGTCCCCTCCCTGCCTACTGCCAGCCCTCTGTTGATGCAGCCCAGGGTACTGTTGGCCTTCTGATTTGCAAGTGCACTCTGCTGGCTCATGTCAAGGTTTTCATCCACCAGGATACAACCTAACAATGGCTCTTGCATTGAAAGATGGGTGAAAGCTGTGTGAATTTGGCTTAATGATGAGAGCAACTTGCTGTAAGGATATGGTGAAGCTCCTGTGTTGTGAAAAAATAATCCCAAGAAGACAGAATATGAGGACTTTTACTTGCTTCCTAGTGAATCCTGCTCAAAGCAACATTTACCTCTACCCAGTTCCCCAGCAGAGGCAGCGAACAGGGCAGGGACAACATCCTTAGCAGTAAATCCTGCTGGTTCTGGTTCCTTCCCTACAGGGTTCCTGCTATCAGCCTGCTGTGGTATGGACACCATGCACATGGGCTCTCCATTCCTTACCTGAGAAACCAGGAATGAAGCCAAACTGCAGTATCCTGCTGACAAACAGAAATATTGCTTTTCTGTACTCCCAATTGCTTTGGCATTGCTTTGGCATTGCTTGCTTTATACATGGGCCCTCCATACTGTTAGCTGTTTCTGGGCCCCACTCAAGTGGGGTTTATGCTGTCAGGCAGGGTGGGGGAATCAGGATGCTGAGCAGCTGTGCACCCACATGTTTTTCTTTTCCACAG
Seq C2 exon
GTGGATGACCTGAAGGCCAAGCTGGCAGCCCAGGAAGTGGAGCTAAAGCAGAAGAATGAGGATGCCGATAAGCTGATCCAGGTGGTGGGTGTGGAGACAGAGAAAGTGAGCAGGGAGAAAGCAGCTGCTGATGAAGAGGAGCAGAAAGTGGCACTCATCACCCAGGAGGTCCAGCAGAAACAGAAGGACTGTGAGGAGGACCTGGCCAAAGCTGAGCCTGCCCTGGCAGCTGCCCAGGCTGCTCTGAACACCCTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.264
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
A:
NA
C2:
PF127772=MT=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]