DreINT0058333 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10389258-10389883:-
Coord C1 exon
chr6:10389650-10389883
Coord A exon
chr6:10389405-10389649
Coord C2 exon
chr6:10389258-10389404
Length
245 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAAC
5' ss Score
2.31
3' ss Seq
ATTATGTATCTCTATTTTAGGTG
3' ss Score
11.39
Exon sequences
Seq C1 exon
CCGGATGTGAGAGTGTCTATTAGTGAGTTTATCTCATTCGCTCACACTTGTGTGAATGAAGTCAGTGTAAAGTATCAGCAGAATGAAAAGCGCTTCAATTACACCACACCCAAGAGCTTCTTGGAGTTCATGAAACTTTACGGCAACCTGCTGGGCTCAAAGAGAACAGAACTGAGACAAAAGACAGAACGCCTGGAGAATGGCCTGCAGAAGCTGCTGACCACGGCATCACAG
Seq A exon
GTCAACTTTACTTTAAAAAAGTACCAAACAATTTATAAATGTAAACTGATTAGTCTGTATTTTGGCACAACCAATGAATGCATCTCATTATAGAAGCAGAAGGAGTTGCACAAATTAAATTAAACCAGAAATGAAAATTGATAATAACTATATTTGAGTTTAATTGTTACACCACCTTCTTAATCATAAATCTTACAGACACATTATGTTTAGTTGTTGCATTTCATTATGTATCTCTATTTTAG
Seq C2 exon
GTGGAGGATCTGAAGGCTAAACTGGCCATACAGGAAGTGGAGCTGCATCTAAGAAACACTGATACTGAAGCTCTCATTGCTAAAATTGGCCAGCAGAGTGAGAAACTCAGTCAGGAGAGGAGCGTTGCAGATGCAGAGGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
NA
C2:
PF127772=MT=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTCACACTTGTGTGAATGA
R:
GTTTCTCACTCTGCTGGCCAA
Band lengths:
303-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]