GgaINT1011522 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10088599-10089197:+
Coord C1 exon
chr18:10088599-10088832
Coord A exon
chr18:10088833-10089032
Coord C2 exon
chr18:10089033-10089197
Length
200 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCATCCTCCCCGCTGTGTAGGTG
3' ss Score
7.96
Exon sequences
Seq C1 exon
CCCGAGGTCAAGGTCTCCATCAGCCATTTCATGTCCTATGTGCATATGAGCGTGAAGGAGATGTCCCAGACCTACCTGGCTGTGGAGCGACGCTATAACTACACCACACCAAAGACCTTCCTGGAGCAGATAAAGCTCTACCAAACCCTGCTCTCTAAGAAGAGGAGTGAGCTTACTGCCAAGATTGAGAGGCTGGAGAATGGCCTGACAAAGCTGCAGAGCACGGCCTTGCAG
Seq A exon
GTGGGCATGGTCCGGCTCCATCCTGAGGAGGGATGGTGGGCACGAGAGCAGGGCTTCGCCCCACACAGAGCTCTCGGTTTGGGCAATGGGCCACGTGGGCTGCTGGGGCACGGGTGGCAATGCAGCCCCCAGCCGAGGAGCCCGCTGGTCCCTTCAGGGTTTGATGGTGCCCGACCTCTCCCATCCTCCCCGCTGTGTAG
Seq C2 exon
GTGGATGAGCTGAAAGCCACGCTGGCAGTCCAGGAGGCAGAGCTGAAGCAGAAGAACGAGGATGCAGATAAACTGATCCACGTGGTGGGCGTCGAAACAGAGAAGGTCAGCAAGGAGAAAGCCATCGCTGACGAGGAGGAGCTGAAGGTCCAGGCCATCAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
A:
NA
C2:
PF127772=MT=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACCAAAGACCTTCCTGG
R:
GTTGATGGCCTGGACCTTCAG
Band lengths:
293-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]