MmuINT0050779 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117917046-117918394:-
Coord C1 exon
chr11:117918161-117918394
Coord A exon
chr11:117917211-117918160
Coord C2 exon
chr11:117917046-117917210
Length
950 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CCTGGCTCCTCCCTCCCTAGGTG
3' ss Score
12.46
Exon sequences
Seq C1 exon
CCTGAGGTGAAGACCTCCATCAGCCTCTTCATGGCCTACGTGCACACCACCGTCAACGAGATGTCCAAGATATACCTGACGATTGAGAGGCGCTACAACTACACCACGCCCAAGACCTTTCTAGAGCAGATCAAACTCTATCAGAACCTGCTGGCCAAGAAGAGGATGGAGCTGGTCGCCAAGATTGAGCGGCTGGAGAACGGCCTCATGAAGCTGCAGAGCACGGCCTCTCAG
Seq A exon
GTAGGAGCCCTGGGGCTCAAGCCCCTGCCGTAGAACCTTCTCACTGGAGCAGGCCTTCCATGGGGGGGGGGGGGGTTGGGGGGGGGCAGTCACACTGTGGGCACAGTCATCCCACGCAGCAAGATGAGCCTGACTCCAATATTTGGAGGACTGGGGTGTGCCATCAAAGCCACAGGTGCGAAGCGCTCTGATGACATCAGCACTAAAATGGGCACACGTGAGGGCGCCGCACCCATGTCCAGGGCAGCCCAGGAAAATGCATGTGATGCTGCACACTGTTCACACTGGGCGCCTGCTTACAGGCTGCGTGCAGGCCTCCCTGTCATGCCACATTGATCATCAAGGTTCCTGCATGGCTTGAAACACCCTCTCTGCGGAGTCCGGCTACTGCACCGCCACAGCCCCCCTGCCTCCTCCTTCCTGCCTAGGTTGGGCCAAGATGGGCCTCACCAGCTCTCAGGAGTTTTTGGCCCCCAGTCTCAGCTTCTCTCCCACTTCAACCAACACGCAGGACTTTAATCACCCTCCCCCACCCGCACCCCAGGACAATCTCTCAACTTACAACTTTTATTAAGGGGTCACACTTTTTTTCATAGTCCTGTCTGGCCTGGAACTCGCCATATAGACCAGGCTAACCTTGAACTTTGGTCTTCCTGCCTCTGCCCCCCAAGTGCTTGGATCACACCCTTATGCACCCCTGTCCCCCAATCCCAAGTTAAGTTGACATTTTTGAATCTGGTCACCTTGACTCCTAGCATACCAGGACTATGTCTTAGATATATGTAGTTCCCTGTAAACACTTTCCTCGATATAAGATTTCCTTCGATATATTGAAAAGACTCCAGAGAGTCCCTGGGAGTTGGGGGCACCACGGCTGCTCTCCTGAGTCTAAGGGCAAGCAGCACACGGGCCAGCCTCGCTAGGCAGCCTCCTGGCTCCTCCCTCCCTAG
Seq C2 exon
GTGGACGACCTAAAGGCCAAGCTGGCCGTGCAGGAGACTGAGCTGAAGCAGAAGAATGAGAATGCAGACAAGCTGATCCAGGTGGTGGGTGTGGAGACGGAGAAGGTCAGCAAGGAGAAAGCCATTGCGGACGAGGAGGAGATGAAGGTGGAGGTCATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:57
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(12.6=19.2)
A:
NA
C2:
PF127772=MT=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCATGGCCTACGTGCAC
R:
GTCCGCAATGGCTTTCTCCTT
Band lengths:
342-1292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: