RnoINT0048826 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107065706-107067038:-
Coord C1 exon
chr10:107066805-107067038
Coord A exon
chr10:107065871-107066804
Coord C2 exon
chr10:107065706-107065870
Length
934 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CCCGGCTCCCCCCTCCCTAGGTG
3' ss Score
11.3
Exon sequences
Seq C1 exon
CCTGAAGTGAAGACCTCCATCAGCCTCTTCATGTCCTACGTGCACACCACAGTCAATGAGATGTCCAAGACGTACCTGGCGACAGAGAGGCGCTACAACTACACCACGCCCAAGACCTTCCTGGAGCAGATCAAACTCTACCAGAACCTGCTGGCCAAGAAGAGGATGGAGCTGGTCGCCAAGATTGAGCGGCTAGAGAATGGCCTCATGAAGCTGCAGAGTACGGCCTCTCAG
Seq A exon
GTAGGAGCCCCGGGGCCTGGGTGGCTGCTGTAGAACCTTCTCACAGGAGCAGGGCTTCCCGGGGGGGAAAGGGGGGACAGTCACACACAGGGCGCAGTCGTACACAGGGCTGGACATCTCTCACAGCGGAATGAGCCTGACTCCAGCATCTGGGAGACTGAGATGTTCTGTCAAAGCCACAGGTGTGGCACACTTTGATGACATCACCACCAAAATGGGCACCCCCCGTGAGTGCATCGAGCCTGTGTCCAGGGAAATGTGCTTCTCAAGGCCAAGGCACCCAGGAAGATGCAGCTGTTGCTGTATGCTGTTCATACTGGGTGCAGCCTACTTATAGGCTCCCTTTCATGAGGTCCCTTTCATAAGGTCACACTGTGTGATCCTGCCTGGCCTGGAGCTCACCATATAGACCAGGCTAGCCTGGAGCTCTCCATGTAGACCAGGCTAGCCTGGAACTCACCATATAGACCAAGATAGCTTTGAACTTGGGGCAGTCTCCCTGCCTCTGCCAACCCACCCACCCCCAAGTGCTCAGATGTACCCTGGTGTACCCTTGCCACCCAAATTCAGTTGACATCTTTTAATCTGGTCACCTTGACTCCTAGCACGCCAGGGATATGTCTCAGCTATGCAGTTTCATGTAAATGCTCATTCCAAGATGTCCTCTGATGTATTTTTTTTTTTTGGTTCTTTTTTTTTTTTCGGAGCCGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCCTCTGATGTATTGAAATAGACTCCAGAAAGAACCCCTAGGAGTTTGGAGCCACCAAGGCTGTTCTCCTGAGTCCGAGGTTGCCACCAACCCACGGGCAAAGCGGCCCATGCTAGCATCCTCGGCTTCTGCAGCCTCCCGGCTCCCCCCTCCCTAG
Seq C2 exon
GTGGATGACCTAAAGGCCAAGCTGGCGGTTCAGGAGGCCGAGCTGAAGCAGAAGAACGAAAACGCAGACAAACTGATCCAGGTGGTGGGCGTGGAGACTGAGAAGGTTAGCAAGGAGAAGGCCATTGCCGACGAGGAGGAGATCAAGGTGGAGGTCATCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
A:
NA
C2:
PF127772=MT=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTGCACACCACAGTCAA
R:
ACCTTGATCTCCTCCTCGTCG
Band lengths:
348-1282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]