BtaINT0050373 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54378107-54379596:+
Coord C1 exon
chr19:54378107-54378340
Coord A exon
chr19:54378341-54379431
Coord C2 exon
chr19:54379432-54379596
Length
1091 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCCTCACCTCCCCCTCCAGGTG
3' ss Score
11.92
Exon sequences
Seq C1 exon
CCGGAAGTCAAGGCCTCCATCAGCCTCTTCATGTCCTACGTACACACGACTGTCAACGAGATGTCCAAGGTGTACCTGGCCACCGAGAGGCGCTACAACTACACCACGCCCAAAACCTTCCTGGAGCAGATCAAGCTGTACCAGAACCTGCTGGCCAAGAAGAGGATGGAGCTGGTCGCCAAGATCGAGAGGCTGGAGAACGGGCTGATGAAGCTGCAGAGCACGGCCTCTCAG
Seq A exon
GTAAGAGGAGAATGGGGCCACGGGACGAGCTTCCGGAACCATCCCCCAGACGTGTGACATGTTGGTAAGGGGACCAGGACCCCCGCCTTGGGGAAACTTCCACTTGTAAACTAGAGTGAGGGTGTTGACCGTGACAGCGGGTCCCAGATCCTCTCGGGATGCTGAGGCCAGGTCAGGCGCTTCCTTGGGGAGGGAGGGCCTGAGTCTGGAGGGGTTTGCTCACCCCGTTGGGTGCAGCTCTTGAAGGTGGGTCCATCCTGGGGCACCGTTCACACTGCCGTGCCCCGATGGAACAGTGTCTGCTGTACTTTCACGCCACGTTAATTTTTAGTCTTCTGCCTGGTTTTGAGTGTCTTCCCTGGTGTAGTCCGGGCTCCTTCTTTACTGCTCACTGTTGGCTTCTCCCCAGGGAGCCTGGTAGACAGCCCCCGAGTCCCTGCCTCCCAGCCAAAGGTGCAGGTGGGGAACGACCCCCGACACAGGCGGAGCTACATGCGTCCGGCCACCCCTTGGGGGTCGAGAGGGGCACACAGTGGTGGGGGATGTCCAAGAAAGCGCTTACAGGAGCTGAGAAGTGGCCTGCCCCCTCCCTGGAAAGGAAAGAAAGAGGAGCCTGGCCCAGCGGGCGTTTCTTTTTCCCCAAATATACCTTCCGGAAGTGGTCCTAGGACACAGTGAACGAGCTCAGGAGAGGGCAGTTACAGCACCTGAGGGGCTTCCCCAATGGTAGAAATCACCCAGATGGGGAAGGATGTCTCACCCCATCACTCACCACTTCCCAGTACCCTCTCCACCCAGCCTCTTGGGGCCTCACCCGAGCACCCAAGGCAGCATTTCATCCCCAGCCCCCAGCTCTCACAGCCCCACCCACCAGCCTCCCCACGACTCCTCGGCACCCTGGCCACCTTGACTGCCGCCTCCCCAAGCCTCAGGAATGGGTCTTATACTTGTGATGACCCTGTGTACACAGCTGGTGCTCAATGAATACTTACCTTGGAGAAGCTGAAAAAGCACAGAGAAATGCACCCCAGGGAGCAGAAAGCAACTGGCCAGGACCCCAGCCTACCCGTCTCCCTCACCTCCCCCTCCAG
Seq C2 exon
GTGGACGATTTAAAAGCCAGGCTGGCGGTTCAGGAGGCAGAGCTCAAGCAGAAAAACGAGAATGCGGACAAGCTGATCCATGTGGTGGGTGTGGAGACCGAGAAAGTCAGCAAGGAGAAAGCCATTGCTGATGAGGAGGAGATCAAGGTGGAGGTCATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.4=19.2)
A:
NA
C2:
PF127772=MT=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCAAGGCCTCCATCAGC
R:
TGCTGACTTTCTCGGTCTCCA
Band lengths:
343-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development