MmuINT0050698 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119221422-119226026:-
Coord C1 exon
chr12:119225793-119226026
Coord A exon
chr12:119221569-119225792
Coord C2 exon
chr12:119221422-119221568
Length
4224 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
AGTGACAACTTTTCCTTCAGGTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCTCATGTTCACACCAGTGTAAAGGAAGTGAGTGCCTGGTACTACCAGAACGAGAGAAGATACAACTATACCACCCCCAGGAGTTTCTTAAAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGAAGAGGTAAAACAGAAGCAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACTACAGCCTCACAG
Seq A exon
GTGTGACCAGGGGAAGGCCCTCAGAGGTGTGACCAGGGGAATGGGCCTTACAGGTGTGACCAGGGGAAGGAGCCTCACAGGTGTGACCAGGGGAAGGCCCTCAGAGGTGTGACCAGGGGAATGGGCCTTACAGGTGTAACCAGGGGAAGGGGCCTCACAGGTGTGACCAGGGGAAGGCCCTCAGAGGTGTGACCAGGGGAATGGGCCTCAGAGGTGTGACCAGGGGAAGGCTCTCAGAGGTGTGACCAGGGGAATGGGCCTCAGAGGTGTGACTGGGGGAATGGGCCTCACAGGTGTAACCAGGGGAAGGGGCCTCACAGGTGTGACCAGGGGAAGGCCCTCAGAGGTGTGACCAGGGGAATGGGCCTCACAGGTATGACCAAGAGACAGGGTGTGACCAGGGGAAGGCCCTCAGAGGTGTGACCAGGGGAATGGGCCTCACAGGTATGACCAAGAGACAGGGTGTGACCAGGGGAAGGCCCTCAGAGGTGTGACCAGGGGAATGGGCCTCACAGGTGTGACCGGGGAATGGGCCTCACAGGTATGACCAGGGGATGGGGTACCTCTTTCTGAGAGAAGCCTCTGCTTGTTCACTGAGAGCTGGGGTTCCTTGTAGATGTTTTTTTTGTTGTTGTTTTGTTTTGTTTTTTCTTTCTTGGCATTTTTTTGAGAGTTTCATATAATCATAGCATTTCTCTCTTCCCTCTCCTCCCTAGAAACTCTTCTATATACCTCTCCTCCACTCTCCTTCAAATCCATGGGCATTTCTTTCACTAATTGTTATTGAATGCATGACTTTATCTACATACATAATTCTAAATACAGCCTGTTACATCCATTTACTGTTAGTTGCATTATGTTTTCAGTGATCTTTGGATGCTCGCTTGCATCCAACTTTCCTTAGTTACTCATACTTCTGTGCGTGGCTTTCCCCCATTCCACTTGTGTATTTTGTCTGGTGTTGCTTCTAGTTCAGCCTGTGTTCAAACATTCAGGCTGCTGAGTCTTTATGAGTATAGTCCTAACATTGCTAGAAGACACAGTCTCACAACAAATTCCCCGGTCCTCTGGCTTTTTAAATCTTTCTTTCCTCTCTTGCACAGTGTTCTCTGAGCCTTTAGATTCGAGAGCATTTTGTAGACTGGGATCCACACTCTGTGTTTTGATTGGTTGTGGGCTTTTTGTAGTGGTCTATCACAAAGAACCTTCCTTATGAAGAGTGGAGACTACACTTTTCTGTGCGTGTAAGGACATATGTTTATAAATTGTTACCCCTAGAGATAGAAGGTAAATCCCTATTATTGAAGGCACTATACAGGTCCCAGAGGCCCCTGAGCAGGCACTGGTCTGAATTCCGTCTTTCTGAGTACTAGTTCTCATGATACCAGAAAACACAATGCAAGTGTCCAAAGGAGGGAAGGAACCAGCAGTCCTCCCTAGCTCTGATGCCCATGAATCACACTAACAACTAGCATGGCAGGATAACCCTAAGGATACATTAATAGCACACATACACTGGCAGTAACCAACAGCATTCTAATATGACTTAAGAACTGCTTAACAAGAGTGATACCATGTCTGATGCCAGATCCCTAGCTTACTGCTCAGTGCTAGTGGAGTCCTGGTTATTGGAGGAGAATCTATAACTGTTACTTCACTAAACTAGCTTAATCACTAGGTTCCCCTGAAGTAACATCAACCCAGTTTTCTAGGATGTTTAATTTTGGCTTGGACAGTTTGAAGACAGGGCCACACACTGCTGTGGCTTTTCTGAATGAGGAAAGGATTTACCAGTTGCTTTTTGCCCCTGCTGATTTGAGGATACACCTTCTCTTCCCAGTCTGAAGCTGTGCAGAGCAGTGTAGATTTAAAGGGAACCACTTCCCATTTCCTCTCTGGTCCCTGACTTCTTAGGCTCTCTCTCTGGCTTGTAGTCAGGGATTTTGCCATGTTGCCAGGATGGAAGTAGGATTTCCTTATTGTCTTTGACACTCAACCCCAGCAAGGCCATCATGACCTGCAAGATGACTGTGGAGCGGCCCTTGGTTCTGTACTTTTCCCTGACCTCAAAATCTATGTGCCTGCTTCAACTACCAGTTCTCTCAGATGCCCTACCCTGTCACCAGGTCCCTACTATGTCAGAGTATGACATCCCAACCTAAAGAGCAAATCAAGACTTATTACGATGTCAGAGTCTCATTTTGTTGTTAAAGTGTTTCTCGGCCATTTGAGATTCCTCTTTTGGAGAATTCTCTGTTTAGCTCTGTATCCCATTTTTTGAATTGGGTTATTTGGTTTGTTGGTGTCAAAGTCCTGTTAAGCCAAGAAGAAGATGAAGAAGTAGTTATGTGTTGTAACACTTAGATCCCTTCTAATGATATCTCACAATGACCTATTGACTTTGCCCCAGGAAATAGTAGTGTTGTCACTCAAACTGAGCTGTCCGTTTCCTTGCCTTTGGCAAAGAAAAATAAGTCTCTACCATACTTAGAGTTGTCCTCCCAAGTACCAGAGCTAAAGGCAAATAACACAGAATCTTGGAAAATTCTAGAGGTGGCAGTGTCTCAGCCACTGGGAAAGAAGAAAGCCTGTGGTTTCTTAATTACCCCCATCTAAGTATTGAGGAGTCAAGGTTGGGGAAGAAAAGGGAGGGGGAAGAACCAGTCTACTTTCTCTGCCAAATACAGGATTACCTGGGGTCTCACTTGTTCCCCTCAACTAAAGACAATAGGAAAGAGCTTTGTGAAGATATGAGAAGCCTTGGGGTGAGGCATGTAGCTGGATCCTTTTTTATTATGTGTTCATACTTGGAACACTTCTAGTATCAGAAGAGTGGTTGGATGTTTAATAGTTATTTGACAGTTGTGTGAAAATCAATTTATTATGTAAGGGAGGTATGGTTTCCCATGTGGAGACTTGAAGAATCTTAGAGTGTTGAACCCAATTGTGTTTGAGACAAGGTGTCTTTTTCTCTGGATTTGCCTGCCTAAAGCAGTGTTGGCTAGTGTGTTTCAAAGTCAGCTGCTTCCCTAGAAACTGTAAGTAGGGCTTGAAATTGTATCCTGCCTCCATCCCTTTCTCTTAAATAATTATGGCCGGACAGAAGACTAGTGTTGATGGCTAGAACAACAGAGAAGCACATATATACACACATGGAAAGGCCAAGACTCAGTCCTGGTTTAAACGGCAGTGGATACACCATGGCTATGCTGCTTGTGTAGAGTATAGACATGTATGTTTGGATGGATAGGGACCACAAACTTACCTGGACACATGTAAATGGGATGTGTTACACAGACAAAGCCTCTCAAGTGTCTTTATTAATTGAGTCAAAATAAATATTTACTTTGCTTTTCTGTCTCTTAGTTTAACTGGGGGAAGAGCAGTTATCCCAGTTTCATGTTTTGGAGGTGGAGTCAGAATACTTTAAATTCGTTCTCCACTTCTGCTTTCTTTTATACAGTCCTCTTAGGAGCCCAATGACACCTGTTGAACCCAGGAGAATCTCAGCTGAAAATGGGCAGAATCGGTCATTTTAGCTTTCACATGTGTCGATGTGAAAAGATTGCTCCTTGAGAGCTAAGTGGGCTGTTCAGTGGTGAACCAAGGGAAAAGATGGAGCATGCAATGGGTTTCTGTAACCCGTGCTTTGTTGGCCTCCAAAGAGCACACACAGTTCCCCCTTCTCAGTAGTGCTAGATTCTGTATTGGATGGTCTGTGTGACTCTACATTAATACCACAGAGGTGAGTAAATAAAATTGGCACCGCAGTATGAGGCCAGTTACTCTGCATTCAAAGACAACTCATGCCTTTTCATTATTGAAGCTTACAACAGCTTTCCATCAAAAGTACAGGCAGGTGTCACTAAGCCAGCCTTTGTGATCTTGAGCCTGAATTTAGAGCCAAGAAGGAAAGAGTCCTGAGGTGGCAAGTGGACACATTTGTTAGTATTTCTCTGAGCATCCAGGTTTAGAATCCAAGATAAACTACTTCTCAGTGCTGACACACCATAATCCTTTGAAGCTGTATTCTTCTTTTCTCATGCTACCAGCTCTCAGGTGCTGATAGCTGTACATGGAGCTATATTTTGGCAAGTGGGAGTGGAAGTGAAACTGGGGTAGAAACAGATGCGTGCTAAAACTGCTAGAGACCCCGGTATCCATGCTGAAGACTAAGCTATGTTCTCATCAGAAGTTGCTACAAAGTGACAACTTTTCCTTCAG
Seq C2 exon
GTGGGAAATCTGAAGTCCAGGCTAGCCTCTCAAGAGGCTGAGTTGCAGCTCAGAAACCTCGATGCCGAGGCCCTGATCACAAAGATTGGGCTTCAGACGGAGAAAGTGAGCCGGGAAAAGGCCATCGCGGACGCGGAGGAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:56
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
NA
C2:
PF127772=MT=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: