DreINT0009185 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19437722-19441283:-
Coord C1 exon
chr16:19441050-19441283
Coord A exon
chr16:19437869-19441049
Coord C2 exon
chr16:19437722-19437868
Length
3181 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CATGATATTTTTGTGATGAGGTG
3' ss Score
-3.53
Exon sequences
Seq C1 exon
CCGACCATTTGGGAATCCATCAGTCTTTTCATGGCCCACGCGCACACCAGCGTCAAGCGGGTTAGCGAGCGTTACTGCTGCAACGAGAAGAGGCACAACTACAGCACATCTAAGAGCTTCCTGGAGCAGCTGAGGCTTTACAAGAGTCTACTGGAAAACAGGGAGAAGGAACTGCATCAGAGACTTGACAGGCTTCAGTCTGGCCTTCAGAAAATCAAGAGTACTGCTTCTCAG
Seq A exon
GTGTGTAGAGTTCAAATTGGGGTACTGATACTAGTTAAAAGGATAGTTTGACCAAAAATGAAAATTCCATCATCATTTACTCACCCTTGTTTCAAATATTTTGAGTTTACTTTCTGTTAAACTAAACAAAATAAGGTGTTTTCAAAAAATGCTGAAAACCTGTAATCATTAACTTCTATTTTATTTGTTTTTCGACTATGGAAGTAAATGGTTTTCAGCTTTCTTTTAAATCTTTTCTTTTGTGTTCAGCAGAATAATGAAACTCATAACCGTTTGAAACTACCTGAGGGTCAGGAACTTAGTACATTTTCATTTTTGGATGAACTATTTTTTTGCAATGTTATTATTTATTCACTAAGAGTCGAGGGACTCATAAACATTCAGCCCTAATTTTTGATAATTGCTTACCTTTGTGATATGTTTTTTTATGTTGTTTTATTAAAAAAATAAAAAAATGTTTTATGTTCTCTTTCATTGATAGCTGCAATGATTTACCTGCAGGCGTTTCAAAATCCACCGAATAAAATACATTAAAAAATACTGCAGTATGTTTCAAATTCAGCTGCTAATTCAGACAGAGATCATCGCTCTATACTCTATATTGGCTTCATGTTAGTTTTTGTGTTGATGCTTACATATTAGGCCTTGCATGGTTTGGCTCTTCCAATATATTTCAGAACGTTCAACTGTGTACTCTCCTAGGTGGGATCTTAGTTCTTCTGATTTACGTCTTTTAACATTTCCCTCCACTCGTCTGCGCTCTATGGGGGACCAGACTTTTTCTTCTGTTTCTCCAAATCTCTAGAACTCAATTTCCCATAATATTAGGCACACAGAATCTTTTGAAGCAATTATTGTATGCTTGAAGACTCCCTTTGTTAGACTTGCATATTTGGGAGGTGTATGTGTATTTTGGATACATATGTGGTGGGAGGCGAGCGTTGGCTCGAGGCCACAGGCCAAATGCCTTAGTGTTCCACCAGTGATGATATACAGCCATATCGCACTGCTACGAGTAGGAAATTGCTTTTATAAAACTGTTTCACATTATCGTGTATATAAAATTCATAATCGTCAGTATAAAAAAGAAAATCCTTTTGTATGAGGAACTATTTTCTTCCACCATTCATTCACATCTGCAGCTGAAGTCAAAACAATAGAAAACTTTGATATTTCGCCAACGTTACTTTAGAGCTAGTATTTGTACGATTCTCTAGCATAATGTCTAAAATGATGACAAAACTCACATTTTAGGATTATAAGGCTGAACGTGAACATGAAATGCCATCAATCTAAAGAGATTTCCAAGTATTTCTCTGTTGCAAACCGGATTTTGCAGTAATTAACCCCGAAAAGACTAAGGCAAGTCAAACACTACCAGATTACTCTGGTATTTATGCACCACTTAAACATACAACAGAGAGAGATCATCTCGATCATCAACGTGGAGTTTTCCCCATCTAAGGACTTATTATGCGGTCTTTTTCACCATCCCATGATGTGGCGGAACATCAACTGTCTTTGCTCTGCTCAGTATTTTAGCTAATCCTCAGAAATTATGAATATTTAAAATAGGCACTCACCTTATAAATAAACTGCATAGTTGCAGTCTAAACATCTACATTCTCACCAGTAAAAGTAAATTATGTTGTTCTGTATAACCTGCAATATTTGTCAAACTGTAGTGAGTTCATTGATCTGCTGTCACTCTTTCGTCACTCATTGCTGGACTATCAGCCAATTAGATTCGAGAACCAGACAGAATTGTTGTGTGTGTGTGTATTTTATGTATATGAATATTATATGTATATTATATCTTTCCCAGTTTTACACAACATGTTTTATTGTGATGATCAGTAAAAAAGCAGAAAAGTGTGGCATTTGAATTTGGCCTGTGTAGACTCCTCAAAGCTGCAGTGGTGGGACAGTGGAGGAATGTAGTTACTGCTAGTTAATATGCCCATCATCGCTCACCGAAGGCTGAGGGACTCGTAAACCTTCAGTCTGGTAGTCTGAAGATTGCCTGCCTTTGTGATATAGGGTTTAGTATTCAAATGTTGCAGAGGTTTTATCTAATAACTGGATCTAGATTAAAAATAATAATAAAAAAGAAACGCTGTTTTATCACTTGCTGAAAGTTGTAAAAAGCTGTCGGCAAGGTCTCAGAGAGCTTTTATTGTAAGATTAAATTTAATCATATGTTTGATGAAAGTACTCTAGAAGAAATTGGTGAAATTATTTCTTCAAGAGTCACATTGAGATATTTAATTTAAATTTAGAAATACAGTAATTGTTTGTAATATTCAATAGTCAGAATTTAAAGTGGATCAAAACCTTTCAACAAAATTGTCCTAAAACTGTTCAACAACACTCATTTTTATTTTACAAATGTGAAAAACTTTTTAATGTTGACTACTGAAAGTAGTGAGTTTTAACTTATTAAATAAAAAAAAATACCTCACTAGAACTCAATAATTAGGAGTCATACATACAAAACATCTTACTGGCCTTAGCATGCTATACTAAACATGTAAGCAAAATGCTAAAACATCTTAGAAGAGTGCTAACAACTTCATAGCAATGTGTTACACAACAACATTCTAAAACATGCTAGCAACATAAACTAGCATTGTGGTAAATCAATGTACTAAAATATGCTTGTAACATGCTAGCGTTGTGGTAAAAATTTAGCCAATGCCTTATCATATTAAAATATGACAGCAATATCTTAACATATATTAACAAAAAGTTAACATTGTTGTGCTGCAAACATGTTAGCTGTATATTAAAACAAACAATAAACATTTTAACTGCATTAAACATGCTAGTGTTGTGGCAATTGTTGGTATTGTATTAAACATGCTAGTACATAATATGTTAAAACCTGATAGCGATGTGTTAAAATGTTTATGTTATTGTGCTAGCAAATGCTAACATTCATTCAAAATTGTTTGAGTGTTTGTGACTGTGGACATTTTACAGAACATTCCTATATCTTTCAATTAATTAGATGTGTTCTTGTAGAATGTAAGTTATTATCTATAAAGAAAACTTTTGAATGACTGAACAGAATGTATATAGTATAGTTTAGTGGAATCAGGTAAAGAAGGCATATAGGTAATTATGAATAAATAAGAGAATTTCATATATTATAATCTAAACATGATATTTTTGTGATGAG
Seq C2 exon
GTGGAGGATCTGACAGTAAAGCTGAACTCTCAGGAAGTGGAGCTGACAATGAAGAACCAGGCAGCTGAGGCTCTTATGGCCAGAATTGGCCTGCAGACAGAGAGAGTGAGCCAGAAGAGAGAAGACGCAGACCTGGAGGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
NA
C2:
PF127772=MT=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]