RnoINT0048689 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145882637-145888529:-
Coord C1 exon
chr6:145888296-145888529
Coord A exon
chr6:145882784-145888295
Coord C2 exon
chr6:145882637-145882783
Length
5512 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
GTGACGACTTTTCCTTTCAGGTG
3' ss Score
10.26
Exon sequences
Seq C1 exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCGTATGTTCACACCAGTGTAAAGGAAGTAAGTGCCTGGTACTACCAGAACGAGAGGAGGTACAACTACACCACCCCAAGGAGTTTCTTAGAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGGAGAGGTGCAGCGGAAGAAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACCACGGCCTCACAG
Seq A exon
GTGTGACCAGGGGACAGGGTGTGACCAGGGGGAGTTCCACGGGTGTGATCAGGTGGACAGGCCTCAGAGGTGTGACCGAGGAACAGGCCTCACAGGTGTGACCAGGGGACCAGCCTCAGAGGTGTAACCAGGGGACCAGCCTCAGAGGTGTGACCAGGGGACCAGCCTCACAGGTGTGACCAGGGGACCAGCCTCACAGGTGTGACCAGGGGACCAACCTCAGAAGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAGGGGACCAACCTCAGAGGTGTGACCAAGGAACAGGCCTCAGAGGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAACCTCAGAGGTGTGACCAAGGAACAGGCCTCACAGGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAACCTCAGAGGTGTGACCAAGGAACAGGCCTCACAGGTGTGACCAGAGGACAGGGTGTGACCAGGGGACCAGCCTTAGAGGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAGGGGACCAACCTCAGAGGTGTGACCGAGGAACAGGCCTCACAGGTGTGACCAGGGGATCAGCCTCAGAGGTGTGACCAACCTCAGAGGTGTGACCAAGGAACAGGCCTCACAGGTGTGACCAGAGGACAGGGTGTGACCAGGGGACCAGCCTTAGAGGTGTGACCAGGAGACCAGCCTTAGAGGTCTGACCACGGGACCAACCTCAGAGGTGTGACTAGGGGACAGGGTGTGACCAGGGGGAGTCCCACGGGTATGATTAGGTGGACAGGACTCAGAGGTGTGACCAAGGAACAGGCCTCACAGGTGTGACCAGAGGACAGAGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAAGGAACAGGCCTCACAGGTGTGACCAGAGGACAGAGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAAGGAATAGGCCTCACAGGTGTGACCAGAGGACAGAGTGTGACCAGGGGACCAGCCTCAGAGGTGTGACCAAGGAACAGGCCTCACAGGTGTGACTTAAGGGAAGGCCCTCACAGGTGTGATCAGAGGACAGGGTGTGACCAAGGGACAGGGTATGACCAGGGGACAAGCCTCAGAGGTGTGACCAAGGAACAGGCCTCCCAGGTGTGACCAGAGGACAGGGTGTGACCAGGGGACCAGCCCTACAGGTGTGACCAGCGGAGGCCCTCAAAAGGTGTGACCAAGGGAATGGGCCTCACAGGTGTGACCACAGGGACTGACCTCACCTCACAGGTGTGATGGGGGTAGGGGAGGCCTCAAAGATATGACCATGGTAAGGGCCTCTTTCTGAGAGAAGCTTCTGTTGCTCACAGAGAACTAGGCTTCTTTGTGGGGTTTTTGGGGCTTTTTGGTTTTTTCTTTCTTGGCTTTTTTTTTTTTTTTGAGATTATCATATCATCACAGCATTTCTCCCATCCCTCTCCTCCCTAGAGACCCTGCCTTACACCCATACACCCTTTCTCTACTCTCCTTCAAATCCATCGGCATTTTATTTTCACTAATTGTTATTGAATGCATGTATGTATCTACATATATAATTCTAAATACAGCCTGCTAAGTCTGCTGACTGTCAGTTGTATAAAGTTTTCAGTGATCGTTGGGTGCTCTCTTGAATCCAACTTTCCTTGGATGCTGGGACTGAGGCTTCATGGGCTTTCCCTCATCCACTCGGGTATATTGTTTGGTGTTATTTCTTGTTCAGCCTGTGTTCAAGCAGTCATGCTGGTTGAGTCTTTATGGGTATAGTTCTGACATTAGTAGGAGACACAGTCTCACAGCAAATTCCCCAGTCCTCTGGCTCCCCCAACCCCAACCCCCACCCCACCCCACTCCACACCACCCCCAGCTGAGGACCAAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACACACGAGCTAAATCCCCAACCCCCCTCTAGCTTTTTAAATCTTTCTTTCCTTTCTTGCACAATGTTCTCTGAGCCTTAGGTATGGGAGCATTTTTGTAGACTGGGATCCACACTCTGTGTTTTGATTGGTTGTGGGGTTTTCTAGTGGTCTCTGTCTATAGCAAAGAGAAGCTTCCTTGTGAAGAGTGGAGACTACACTTTTCTGTGGAGGTAAGGACATATGTTTATAAACTGTTGCCCCTAGAGAGGGAAGGTAAGTCCTTATTGTTGAAGGCACTATGCAGCTCTCAGACGCTCCTGAGGAGGAGCTGGTCTGAATGCCCCCTTTCTGAGTACTCCTTTTCATGATCCCAGAAAACATAATGCAAGTGTGCAAAGGTGGGAAGGAACTACCAATCCTCCCTATCTCTGATGCCTGTGAACCACATTAACAACTAGCATGGCAGGATGACTCTAAGGACACATTAATAGCACACATCCCTTGGCAGGAACCAACAGCTTCTAATATGACTTAAGAACTGCTTAACAAGAGTGATGCCAGATCCCCAGCTCACTGCTCAGTGCTAGTGGAGCATGCTTATTGGAGGAGAATCTATAACCATTCCTTTACTAAACTAGCTTAATCACTAGGTTCCCCTTGAAGCAACGTCGACCCAGTAACCTAGGATGTCTAGTTTTGTCTTGGACAGTTTGAAGACCGGGCCACACACCGTTGTGACTTCTGAGTAAGGAAAGGATTTACTAGTTACTTTTTGCCTGGCTGGTTTGAGGACACGCCTTCTGTTGGGGTTTAAATCTCAGGCCTTGTCCAGATAGTACACTCCAAACCAACATGGTTCCACATGGAGAGGTTTAATGAGAGAAGAAGAGTAGAAGGGGGGAGGAGTAAAGGCCAGCCATGAGAGGGAAGGAGGGGGTGGGGAGAGAAGGGACAGGGAAGAGGGCAAGAGAGCAGAGAGAGCAAGAGAGAGAGGAGGGGCAAGCAGCCCCTTTTACAGTCAGGACTACCTGGCTATTGCAGGTAGCTGTGGGGTGGAGCTTAGAATACCAGCAACTTCTCTTCCCTGTCTGAAGCTGTGCAGAGCAGTGTGGATTTAAAGGGAACCACTTCCATCTCCTCTCTGGTCCCTGACTTCTTAGGGACTTGTAGTCAGGGATTTTAACATGTTGCCAGGATGGACGTAGGATTTTCTTGTCGTCTTTGGCATTCAACCCCAGCGAGGCCATCATGACCTGACGGAGGACTGTGGAGCAACTCTTCAGTTCCTTGCTTCTCCCTGACCTCAAGGTCTACATGCCTATTTTAGTTACCAGGTCTCTCAGATGCCCCACTCTATCATCAGGCCCCTACTGTGTCGGAGTACGGCATCCCAACCTGAAGGGCGAATCAAGACTCATTACAGTGTCAGAGTCTCATCTTGTTGCTAAAGCGCCATTCCAGATTCCCCTGTTGAGAATTCTCTGTTTAGCTCCGCATCCCATTTTTGGATTGGGTTATTTGGTCTGTTGGTGTCAGAGTTCCTGTTGAGCCAAGAAGATGAAGAAGTTGTGTGTTGTAGCACTTAGGTCCCTTCCAATGATATCCCACACTGAATCTATTGACTTTGTCCCAGGAAATACTAGTGTTGTCACTCAAGCTAAGCTGTCTGTTTGCTTGCCTTTGGCAAAGAAAAATAATGTCTCTACCACACTTAGAGTTGTCTTCCCAAGTACCAGAGCTAAACGCAGATAACATAGAATCTTGGACAATCCTAGAGGTGTTGATATCTTAGCCACAGGGGAAAAGAAGAAAGCCTATGGTTTCTTCTTATGGAAGAAAAAGGAGAAGGAGGAGCCAGGCCACTTTCTTTGCCTGGGCTACCTGGGGTCTCATCTGTTCCCCTCTGCTAAAAACTATAGGAAAGAGCTTTGCGAAGATACATGAAGCCTTGGGGTAAGGCCTGTAGCTGGATCCTTTTTGTTATGTTTATACTTGGAACACTTTTAATATCATAAGGGTGGTTGGGTGTTTAATAGTTATTTGACAGTTGTGTGAAAATCAATTTATTATGTAAGGGAGGTATGGTTTCCCATGTGGAGACTTGAGGAATCTCGGAGTGTAGGACAAGAATGTACTTGACACAAAGTGCCCTTTTCTCTGGGTTCGCCTGCCTAAAGCAGGGTTGGCTAAAGCTGGGTGTGTTTCAAAGTCAGCTGCTTCCCTAGAAACTGTAAATAGGACTTGAAATGATATCCTGCCTCATCCCTTTCTCTGAAATGACTGCAGCACAACAGAAGACTAGCGTCAATGGCAACGAGAGCAGAGAGGCACACGTGAACGCACAGAAAGGCCAAAACTCAGTCCTAGTTTAAACGGCAGTGGGCACACCATAGCTGTGCTGCTTGTGCAGAGTATACACTGCCGTGTTTGGATGGGTAGGGATCAAACAAACCTACCTGGACACAGCACAGTGGGATGTGTGCCACAGACAAAGCCTCTCGAATCTTTATTGAGTCAAAATACTTACTTTGCTCTTTCTGTCTATGAGTTTAACTTGGGGAAGGTAGGAGAGAGAGAGAGGGAGGGAGGGAGAGAGGGGAGGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTATTCCTATTTCATATCTTGGAGGCAGAGTCTGAATCCTTTGAAGTCACTCTCCAGTTCTGCTTTCTTTAAATATAGTCTTAGGGACCACTCTTAGGGACCACATGGCACCTGTTGATCCCAGGAGAATCTCAGCTGAAAATGGTCAGAATCAGTCATTTTAGCTGACACATGTGTTGATGTCACAGAAAGATTGTTCCTCAAGAGTTAAGTGGACTGTTCAATGGTGAGCCAAGGGTGAAAATGCACACATGAAGAGTACACTGGGTTTCTATAACCTGTGCCTCGTTGGGCCCCAAAGAGCACACACAGTCCACGTTTCTCAGTAATGCTTGGTTCTGCATTGGATGGTCTGTGTGGCTCTACATTAACACCAGAGATGAATAAATGAAGAGAATTGTTTGTGCTAGATGAGAGGACGAAAGACCAGCCAGTTGGCACCACAGTATGAGGCCAGTTACTCTGCAATCAGAGATGGCTCCTGCCTTTACATCATTGAAGCTTACAGCCGTTTTCCCTCAAGAGTACAGGCAGGTGTCACTAAGCCCATGTTCCATTGCCTTTGTGATCTTGAGCCTGAATTTAGAGCCAAGAAGGAAAGAGGAGTCCTGAGGTAGCAAGTGCTCTATACACAGGTTTGTTAGCACTTCCCTGAGCATACAGGTTTAGAATCCAAGATAAACTTCTGCTCAGTGCTGATACACAGTAATCCTGCGAAGCTGTATTCTGCTTTGCTTGTGCTACCAGCTCTCTCAGTTTGGGCAAATGGGAGTGGAAGTGGAATCTGGATAGAAACAGGTGCGAGCTAAAAACTGCTGGGGACAACACCACCCCCCTCACCCATGCCAAAGACTAAGCCACGCTGTCTTCAGAAGTTGCTACAAAGTGACGACTTTTCCTTTCAG
Seq C2 exon
GTGGGAAATCTGAAGGCCAGGCTGGCCTCTCAAGAAGCTGAGCTGCAGCTCAGAAACCAGGACGCCGAGGCCCTGATCACAAAGATCGGGCTTCAGACGGAGAAAGTGAGCCGGGAAAAGGCCATCGCAGATGCAGAGGAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
NA
C2:
PF127772=MT=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]