BtaINT0050284 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30657722-30661970:+
Coord C1 exon
chr4:30657722-30657955
Coord A exon
chr4:30657956-30661823
Coord C2 exon
chr4:30661824-30661970
Length
3868 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GAGTCATGATTTTCCTTTAGGTG
3' ss Score
7.27
Exon sequences
Seq C1 exon
CCCCAGGATAAAGACTCTATTAGCCTTTTCATGGCCCACGTTCACACTAGTGTACATGAAATGAGTACCAGGTATTACCAGAATGAGAGAAGACACAACTATACGACCCCAAAGAGTTTTCTGGAACAGATATCACTGTTTAAGAACCTGTTGAAAAAGAAACAAGAAGCGGTGTCCCAGAAGAAAGAGCACTTGGTGAATGGTGTCCAGAAGCTGAGAACCACAGCCTCTCAG
Seq A exon
GTATGACCAGGGTATGTTGTTACTCAGTGATACCTGTGCTCTTAACATTGAAAAATATGTTTACTTTTGAAGCAGCTTTTTAACCCACTGTGTAAGATACCTGGTCCTAAAATCTATAGATAACGATACAGAGAACACACAGTTCCCATTCTCCTAAGCCTGGAAAGGTATTGGCCACTTACGCTGTCACAGCTGGTTGGCTGGCCTGGCTCTGTGCTGGGCGGTGTCATGATGGTGAATGGAATGGGCACAGCTGGTTTCCTCTCATCTCCCAGTGCTCTGGGCTTGTTGTCACATTGGTCTCAGATTCTCTACCCCGAGTGAAGGCGTCATTTCTTGGCTGGTGCTATGATAAGGGTTGCTGTGACTGGGATCCCTAAGTACAGCTGTTTCCTGCTTGATCTGCTCCTTTTAGCCACCATTTCTCTTAGATGATAGTATCCAGCTTCATCCGCAGCCACACATCCTCCACTGCCTTGAAGGGCAGCACCTCTAATCTCCCTTAGTCAATCCGAAGAGACTTAGCACAGGGTGTTAGTTGTGGGTCTGTACACATATCATCTGATTTCATGGTGAAAAACCCAATATTTAAAGTAGGTGTTGCTAATGTGAATTTACACATGAGGCTCAAAGAATTGAAGGCCACAGAGCCCATGAATTCAGAGTTTGAGCCCAGATCTATATAAAGCCCATGGCTCCAAGCTGCCTCTGTTCAGTTCAGTCACTCAGTCATGTCCAACTCTGCAACCCCATGGACTGCAGCACGCCTGGCCTCCCTGTCCATCACCACCTCCCGGAGCCTCACTGTAACTGGTTAAAAATTAGAATGTGAGAAGACAAAGACTTTGGTGATGGGCCAGCCAGGCCCTCGAGCTAGAAGGGGGGAAAAATATACTTCTCACTGGTGCTCACCTCAAAGCAAGAAACTCCAGTGACCTTTACAGAGTATTTTCATTAGATTGTATGCCCATATGCTTTTCAAGAGATTGGGCCAGTTTTCTCCCCAAGGATGCTGATGGACAGTCCGTGCCTAGGCTGGAGATAAGGTAGAACCTGGTTGGGGGAGCGTATGTTGGCGCCTTTCACCCTGAAGGACTCTCGGGCCATGTCCTTCAAACATTCTAAAGGTCAGGCACCCATTGCTTCTTTGCCCCTTCGTTTCATGCACCAAGGTATGGCTCTTCAGTGACAGATGGTGATCGTTTCTGAACAGTGAGTAGACGGACCATGATTGGGAAAGAGAAACCAGAGTGAGGAGGTTCCCAGGACAGTTTCCAAGACTGAGTGACACAGAGTGTGTGTGTATGTGTGTGCACTCAGTCGTGTCCGACTTTTGTGATGCCGTGGACATTAGCCTGCCAGGCTCCTTTGTCCAGGGGGTTCTCCAGGCGAGAATCCCCGGATCTTCCCGACCCAGGGATTGAACATGCGCCTCCTGCCTTAGTAGTCAGGTTCTGTACCCCCAAGCCACCTGGGACGCCCAATGCAAATAATAGTTGCCAGAAAACTCCCAAAGAACGCATCTTTATTTGTGCATCTTTCTGTCCCTTTAAAGAATGTCTGTCTTTGGTCTCCCTTTTTATATACATTTTATCTTACCTTTTTTTGCCTTCTTTCTCTTTCATTTGTCTTCCCACTCTCCTCCTGTCTTCCCTGGTGGCTCAGGCATTAAAGCGTCTGTCTACAATGCAGGAAACCTGGGTTCTATCCCTAGGTCGGGAAGATCCCCTGGAGAAGGAAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGCACGGAGGAGCCTGGTAGGCTACAGTCCATGGGGTCACTAGGAGTCAGACAGGACTGGGCGACTTCACTTTCACTTTTCTCCTCCTGTCTAATTCCACCTCACTTGAATCAAGACCCTTTTCCCTAGTAAAGACTTTGCTAGGAGACCTGTGAAGCTAAACGTGAAGGAGATCTGGGTCCCAGAGCATTTAAATGTCCCATTGAATGTTGAGGAGCCTGTTGAGTTTGCCCCAGGAAATGTAACAGTATTAGCTAAGCTGAACTGCTGTACCAGGCGGGGCTGACGCTGCTCTCAGAGAGTTTATTTCCCTAGTAACAGAGATAAAAGCATGGGAAGTAGCCGCCTGGTTCTTCTCAGTGATGGCAGCATCTCATTCATAGAGAAAAAGAAAAGGAAAGAATCTGTGGTTTCCTAACAGTCGCCTCAGTTGTGTGCTTATAATTTGGGGGTTGAGGAGAAGAAGAAAGAAAGGGACCAGTGATTCATGGTGACTGCCAAGTTCATGACTGTTTGGAGCCCCCTTATTCCCCTTCAGCTAGAAACAACAGAAAGTCTGAGAAGGAGATACACAGGTCTTAATGGAAGGACTATTAAAGATTCCTTTCCTTCAGGTGTTTGTGCATGTCATGCTCTTAATATCAGAAGAGTGGTTTGAATATTTAATAGCACCTTAGTTAGTGTTGGAGAAGGCAACTCACCCCACTCCAGTACTGTTGCCCGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCACACAGACTTGGACACGACTGAAGCGACTCAGTAATAGTAATAGTAGTAGTAGTAGTAGTTAGTGTTAGTCGATTAGTCGTATCTGACTCTTTGCGACCCCATGGACTGTAGCCTGCCAAGCTCCTCTGTCCATGGAATTCTGCAGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTCCCAACTCAGGGATCGAACCCAGGTCTCCCACATTGCAGGCAGATTCTATACACCTTAAAGAGTTTTTAAAATCAGTTGATTATGGAGAGGAAGCATAGTGTCCTCTGTGAATAGCTGGAAAGCCGGATAGTGTAAGATCAGGTTGTGTGCAGGGAGAGAGGTCTTCATGTGGCAGCAGCCCACAGAGCCAGATAGCCATGCCGTCTGACGTACATCTAACCCTTACCGCTCTTAATGCATTGCAATAAAGCCCTAAGCCCCTTGATGGCCATGTATGCCCTCTGCAGATTTAGTATAGGTCATAATGGAGGGCTCTGGTCACTTCTCTTCATCAGTAAGACCTTGCCTCCAGGGTTTGAGTGGCTTTGGACATTTCAGACCTAACAGCTTCCTTACAGACTGAAATCAGTGCTTAAAATGATTTTCCTTTAATCTCTCGGATGATGCTTTTGATTATGGCCTGCCACGTGACCAGTTTCACTTGGCTGAAAAGGAGAAAGAAGCAAGCATCACTGTGTGGCACGAGCCTGAGTTCACAGAGAGGCTAAAACATCAGTCTTAGCTTAAACTCTAATAGCACAGGTAGCGGTCATAGTACCAGCCATACCTCCAAGGCAGAGTGTAAATAGCCTGTGTTGAAGCAGAGGTTGTAAGGGCCCTTGCATATAGCAGTGGAATGGTGCTCACATGATGAAACCCCTGAAGTGTTTTCAGCAATGGAATCAAAATAAATGGCTGTGATTGTTCTTTTTTATGATTAAAAAAAAAAAAAGTAATATTTATACCCCGCAGGACCAGAAAAGCAGGGTGCTTGTGTGACTTGTGCTCAGGTGGGGATGGCTGGGGGTGCTTCCTTGACTGTACAGATTGAGTTGAGAAGATAAATGTTTAGTTGGTGCTGACATAAATTAATGACATTTTCCACAAAACCATGGAAAACTTACTCTGTTGATTCCTGTGTTTTCTTAAAAAAAAATGGGGCTGCATTTTTGCACATGGAATTAAAGGCAAATCAGGATAGAAACAGATGGAAGTTAGAAATTGTTAGGCATCCCTGAATTCACTTAAAATAATAAGCTATATCTGATATTTGCTGTTGTTGACAGAGTCATGATTTTCCTTTAG
Seq C2 exon
GTGGGAGAGCTGAAAGCCAGACTTGCCTCTCAAGAAGCTGAGTTACAACTGAGAAATCAGGATGCTGAAGCTCTGATCGCAAAGATGGGGCTTCAGACAGAGAAACTGAGCCGGGAAAAGGCCATCGCCGACGCCGAGGAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
A:
NA
C2:
PF127772=MT=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]