GgaINT0127439 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:594448-594809:-
Coord C1 exon
chr18:594639-594809
Coord A exon
chr18:594553-594638
Coord C2 exon
chr18:594448-594552
Length
86 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
3' ss Seq
ATATGGGTTTCTCATTGCAGGTG
3' ss Score
9.98
Exon sequences
Seq C1 exon
GCAGCCATGATGGCAGAAGAGCTGAAGAAGGAGCAGGACACCAGTGCCCACCTGGAGAGGATGAAGAAGAACCTGGACCAGACGGTGAAGGACCTGCAGCACCGCCTGGATGAGGCAGAGCAGCTGGCCCTGAAGGGAGGCAAGAAGCAAATTCAGAAGCTGGAGGCCAGG
Seq A exon
GTGCGTAGGGCTGGTATTTGTGCAAGCGTGTGCAATCCCAGGTCAGAGATAGCAGGGAAGCTTCAAATATGGGTTTCTCATTGCAG
Seq C2 exon
GTGCGGGAGCTGGAAGGGGAGGTTGATGCTGAGCAGAAGCGCAGCGCTGAAGCCGTGAAGGGTGTGCGCAAGTACGAGAGGAGGGTGAAGGAGCTGACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.457
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGAGCAGGACACCA
R:
ATCAACCTCCCCTTCCAGCTC
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]