BtaINT0097460 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30231512-30231881:-
Coord C1 exon
chr19:30231711-30231881
Coord A exon
chr19:30231617-30231710
Coord C2 exon
chr19:30231512-30231616
Length
94 bp
Sequences
Splice sites
5' ss Seq
CGGGTACTT
5' ss Score
5.36
3' ss Seq
CTTCCCAAGTGCTCCCCCAGATC
3' ss Score
4.39
Exon sequences
Seq C1 exon
GCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAAAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGACGAGGCTGAGCAGCTGGCCCTCAAGGGTGGGAAGAAGCAGATCCAGAAGCTGGAGACTCGG
Seq A exon
GTACTTGGGGAAGGGACCCCAGCATAATAAGCGGAGCTTTCCAGCCTGCCCTGGTCATGCTTCAGCCCGACTAACTTCCCAAGTGCTCCCCCAG
Seq C2 exon
ATCCGAGAGCTGGAGTCCGAGCTTGAGGGGGAGCAGAAGAAGAACACTGAGTCTGTCAAGGGCCTGAGGAAATATGAGCGGCGGGTCAAGGAGTTAACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=NA C2=0.771
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100),PF040127=PspA_IM30=FE(34.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100),PF040127=PspA_IM30=PD(8.1=37.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACCTGGAGCAGACGGTG
R:
TTTCCTCAGGCCCTTGACAGA
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development