MmuINT0103481 @ mm10
Intron Retention
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67100798-67101192:+
Coord C1 exon
chr11:67100798-67100968
Coord A exon
chr11:67100969-67101087
Coord C2 exon
chr11:67101088-67101192
Length
119 bp
Sequences
Splice sites
5' ss Seq
CGGGTACCT
5' ss Score
4.35
3' ss Seq
ATCTGCAAACATCTCTCCAGATC
3' ss Score
6.45
Exon sequences
Seq C1 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGAGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATTCAGAAACTGGAGACACGG
Seq A exon
GTACCTGATGGGCGGGGGTCGGGAGGTGGGGACCTCTGCTTGGCCAAGCCCAGCTTCCCAGCCCCTCGGCTCCCAATCAGGGCTCAGCGCTAGAATAACATCTGCAAACATCTCTCCAG
Seq C2 exon
ATCAGAGAGCTGGAGTTTGAGCTGGAAGGGGAGCAGAAGAGGAACACAGAGTCTGTGAAGGGCCTGAGGAAGTATGAGCGGCGTGTTAAGGAGCTCACATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908:ENSMUST00000108689:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=NA C2=0.314
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGAGCAGGACACCA
R:
ATGTGAGCTCCTTAACACGCC
Band lengths:
249-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types