RnoINT0096494 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53643720-53644099:+
Coord C1 exon
chr10:53643720-53643890
Coord A exon
chr10:53643891-53643994
Coord C2 exon
chr10:53643995-53644099
Length
104 bp
Sequences
Splice sites
5' ss Seq
AGGGTACTT
5' ss Score
5.15
3' ss Seq
CGTCCCAAACATCTCTCCAGATC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GCCGCCATGATGGCGGAGGAGCTAAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCACTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGACGAGG
Seq A exon
GTACTTGCCGAGGGGGAGACTGCCTGGCCAAGCCTTGCCAACCTCCTCTCCCCTCCCCACATTCAGAGCCCAGCGCTAGAATAACGTCCCAAACATCTCTCCAG
Seq C2 exon
ATCAGAGAGCTAGAGTTTGAGCTGGAAGGGGAACAGAAGAGGAACACAGAGTCTGTGAAGGGCCTGAGGAAGTATGAGCGGCGTGTCAAGGAGCTCACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGCGGAGGAGCTAAAGA
R:
TTGACACGCCGCTCATACTTC
Band lengths:
253-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]