GgaINT0127776 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:451012-451305:-
Coord C1 exon
chr18:451207-451305
Coord A exon
chr18:451116-451206
Coord C2 exon
chr18:451012-451115
Length
91 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
TGCCCTATTCTCTTTTACAGACA
3' ss Score
10.8
Exon sequences
Seq C1 exon
ATCTGCTGGAGAAGTCCAGGGTCACTTTCCAGCTCAAGGCTGAAAGAAGCTACCACATCTTTTATCAGATCATGTCCAACAAGAAGCCAGAGCTAATTG
Seq A exon
GTAGGAAGTACCAATTTTTTTAATGAAGTCTTAACACAGTTAATAACTGTCTTCATTCTTATGCCCAGATATGCCCTATTCTCTTTTACAG
Seq C2 exon
ACATGCTCCTCATTACTACCAACCCCTATGACTACCAGTTTGTGAGTCAAGGCGAGATCACTGTTCCCAGCATTAATGACCAGGAGGAGCTTATGGCTACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCACTTTCCAGCTCAAGG
R:
GCCATAAGCTCCTCCTGGTCA
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]