GgaINT0127776 @ galGal4
Intron Retention
Gene
ENSGALG00000026748 | MYH1A
Description
myosin, heavy chain 1A, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) [Source:RefSeq peptide;Acc:NP_001013414]
Coordinates
chr18:445731-446024:-
Coord C1 exon
chr18:445926-446024
Coord A exon
chr18:445835-445925
Coord C2 exon
chr18:445731-445834
Length
91 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
TGCCCTATTCTCTTTTACAGACA
3' ss Score
10.8
Exon sequences
Seq C1 exon
ATCTGCTGGAGAAGTCCAGGGTCACTTTCCAGCTCAAGGCTGAAAGAAGCTACCACATCTTTTATCAGATCATGTCCAACAAGAAGCCAGAGCTAATTG
Seq A exon
GTAGGAAGTACCAATTTTTTTAATGAAGTCTTAACACAGTTAATAACTGTCTTCATTCTTATGCCCAGATATGCCCTATTCTCTTTTACAG
Seq C2 exon
ACATGCTCCTCATTACTACCAACCCCTATGACTACCAGTTTGTGAGTCAAGGCGAGATCACTGTTCCCAGCATTAATGACCAGGAGGAGCTTATGGCTACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026748:ENSGALT00000039878:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCACTTTCCAGCTCAAGG
R:
GCCATAAGCTCCTCCTGGTCA
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]