GgaINT0127781 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:447971-449287:-
Coord C1 exon
chr18:449117-449287
Coord A exon
chr18:448278-449116
Coord C2 exon
chr18:447971-448277
Length
839 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
TATTCCCTGCTATCTTCCAGCCC
3' ss Score
7.25
Exon sequences
Seq C1 exon
TTCAACAGCCTGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAACAGTTCTTCAACCACCACATGTTCGTGCTGGAACAGGAGGAGTACAAGAAGGAAGGCATTGAGTGGGAGTTCATTGACTTTGGGATGGACTTGGCTGCCTGCATTGAGCTCATTGAAAAA
Seq A exon
GTAGGTTCATTGTATGTAAGATGCTTTTTGTTGTTTGTGGCAGAATTTTAGGACTTTTCTTCACCCTCAGTTTTTTGCTCTAGTTCAGAAAATAATTTTTAGGGAGTGGCAATTTGGTTACAAATGAAGTATCTTTAGAATATCCATTAGTAAACGCTTTAAAAACAACCTGCAATTTCACTCATCTGCAAATAGGATTAACATGTTTCACACATAAGTTGATACGTAGGATTTTTTGCAGTGTATTTTTAAGTTTGCAAAGATAAAACAGCTCTTTATGGAAACACAGGCACTATTTTCAGTATTAGGATTATGATCTCAATATAAATATTGTGATTTCACAAACACAATTTCTAAGTAAAACCAGAGTTGTACATAGAAAAAAGGTGTTGGATGAACAGGACCGAATAAATATATAATTCTAAACCAACACTTTTTGCGTAACATCCTCTTCTGCATGAATGAAAAGACAAGGAGATCTCATCAAAATATGATTTCAGGAAGTATCTAAAACATTTGTTGATCCATTCAACAAATGTCAAATTTAATTAGCAAATTTAATTATGTTAGCTAGAGAAAGGCTTAATGCAAAAATAAAAATCTACTTCTGATCCATTAGAGTTATCAGTAAATTTAGAAAGACCTGTGTGTCTCTTGTGATGAGATCAGTTCAGAAATGCATCAGTTTCAGGCACTAGAAATTCCCATTTCTTTCAGAAATCTATGTCCAAAGCTTAAAAAAACTCGGATCCATTTCTCAAATTCCTGTGCCTTACTCCAATCTCTTTATGGAGGCAGATTTATATTTTATCTCAATTTTATTCCCTGCTATCTTCCAG
Seq C2 exon
CCCATGGGTATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACTGACACCTCTTTCAAGAACAAGCTCTATGACCAGCATCTGGGCAAGTCCAACAACTTCCAGAAGCCCAAGCCTGGCAAAGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTATGCTGGCACAGTGGACTACAACATCTCTGGCTGGCTTGAGAAGAACAAGGACCCCCTGAACGAAACTGTCATTGGGCTGTACCAGAAATCATCTGTGAAGACACTGGCCTTACTGTTTGCCTCTGCTGGTGGAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACATGTTCGTGCTGGAA
R:
GACAGTTTCGTTCAGGGGGTC
Band lengths:
345-1184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]