MmuINT0103180 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67020922-67022667:+
Coord C1 exon
chr11:67020922-67021092
Coord A exon
chr11:67021093-67022354
Coord C2 exon
chr11:67022355-67022667
Length
1262 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TTCTGTGTTTATTCTTTTAGCCG
3' ss Score
7.72
Exon sequences
Seq C1 exon
TTCAACAGCCTGGAGCAGCTGTGCATCAACTTCACCAACGAGAAACTGCAACAGTTCTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAGGGCATCGAGTGGGAGTTCATTGACTTTGGGATGGACCTGGCGGCCTGCATCGAGCTCATCGAGAAG
Seq A exon
GTTTGTGTGGCTTGTTCAGATCACAGTTGTGTGGTGTGACAAAAGACTACAAATTGCAATGTATGTGTGATGGAAAAGGATGTCTACTGATAAACAAAATGAGGAAAGCATCCTGATAAATGTGACAAGATGTTTTCTTTAACAAAAAGTTCATTTTGACTACTTTGCACGCACACACACACACACACACACACACACACACACACTACATTATACATAATATATTTTGGTTATTTCAATCTTACATTACCAATCTCCCCCAGCTCCTGCTAATTCTTGACTCCTCCTCAGAAAGTCACCCTTCTACTTTTTCTTTTTTTTTAATCCACTGAGTTTGCATAAGAACACATGAGCATGGGGGAGGGGAGATGCTCACCACACCATGGGCAACTTATCAGTGGCTATCCCACAAAAGAATATGTGCCTTCCCTCTCTAGCTGCCACTAACTGCTTGTAGTTCCTCAGGGCATGGTGGGGCCTATGAACTGTCCCATCCAAGGTGAAAGGTTAACAGACCCCATTTTGTACAGGTGTTGGGCAGCTAATTAACCACAGCTATTGAGATCATGAGGGCAGTGGCCAGTTCTGTCACATCCAGAAGACACCGGTTCACCCATCCCCCATCTTTCAGCCCCTGCATTCCTTCTATCCTTTTTTTTTTTTTGAGACAGATATGTTCTATAGAGTCCAGAACTCTATGCCTACCCAGACTTTACAATCAAAGTCTTACATCGAATGCTATTATTCTTATAAAAATTTAGCATTTAATAGAACATTTTTTCTCACTTCCCTGACATCCTTGGACTCACTACTATTGATCTCTGAAATATGAATTTCTAATGCTGTAGACAGAGACTTTCAAATACAAGCTGTGCTAAGCTCATCCAAACACTTAACACCAAGACAGTGCTCTCTGTTCTCACTCCCAGGAGGTCCTTCTGTGAAGGTTGAGTAAGCTTTAGAGTCTACATTGTTAGCAAGACTAAGAACGAACTAGTACAACTAGTTCAGAATGTGTACTTAGAGAAATTCTGCTCCAAGACTTCTAGGTTAAAGATACAAAGTCCAGAAAGGCATAGCCCTCATTTGTCTTCCTTTGTTATATAGCTAAGGGTCTTATTAAATCAATGACTTCTGACCAAACACAGGAGTCTTCACTAGCTCTGTGGAACTGAAGACTGAATTTAGCCATTTGTGTCATCTTTCACTCCTATGAGCAGGCAGAGTTCATGGAGCATTTCTTTCTGTGTTTATTCTTTTAG
Seq C2 exon
CCGATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCGACAGACACCTCCTTCAAGAACAAGCTGTATGAGCAGCATCTTGGAAAGTCCAACAACTTCCAAAAGCCCAAACCTGCCAAAGGCAAGGTTGAAGCTCACTTCTCCCTGGTGCACTATGCGGGCACTGTGGACTACAACATCGCTGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGAGACTGTGGTGGGGCTGTACCAGAAGTCTTCAATGAAAACTCTGGCTTACCTCTTCTCTGGGGCAGCAGCAGCTGCGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCGAGTGGGAGTTCATT
R:
CCCCAGAGAAGAGGTAAGCCA
Band lengths:
358-1620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: