HsaINT0107425 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10411680-10412972:-
Coord C1 exon
chr17:10412802-10412972
Coord A exon
chr17:10411990-10412801
Coord C2 exon
chr17:10411680-10411989
Length
812 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
3' ss Seq
ATTTCTTTTCATTCTTCCAGCCT
3' ss Score
8.92
Exon sequences
Seq C1 exon
TTCAACAGCCTGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAAGGCATTGAGTGGACGTTCATTGACTTTGGGATGGACCTGGCTGCCTGCATCGAGCTCATCGAGAAG
Seq A exon
GTTGGCTTGCTTTTTGCAGACCACAGATCATACTGCTGTACAGTATTTAAAAGAAAATCATAAAATCTTGATATAGGCAATGGCTAAATATTTCTACTTGTGAAAAACATGAGGAGAATTCCTTATTTTGCCAACTCTGAAGTAGATATTCTGGTAAAAGGAGATTAAATATTTTCTATAGAGTCCAGAACACAACACTTACCCACAGTTTGCAATACAAAGTCTTACATTTAAAGTCATCTTTCCTTACAAAAAGTGCACTGACTAGAATATTTTTTACTTACTGTTTTTTGTCATCCTAAAGTCATTATTACTGCATTCAAAGTATGAATTTCTACTACTGTACGTTAAAGCAGAGGCTTTTAAAATCCAGTGTGCGAAAGACCCACCAAGAATACTTGGTACAATTGCAGGTTTCCCTTGTCTCACCCCTAGAAATATTTTCTGGTAAGTGTAGGATGAAACATCGGAATCCTCATTTTGAGCAAGTGATTCTGATGCAGCTAATTCGCAAGTCACACTTGGAGAAATATTGCTCTCAGGTCTTTGGGGTAAAGACACAAACTCCACAGGAGCACAGCCTTCATCTGTCTTACTCTGTCATATCCCAGAGCCTGATACAGCACGTGGCTCCTGATCAGCACCCAATAAATATTTGTGAAGTTAATGACTTCTGACCAAAGGAACGAGTTTTCGTTAACTCTGTAGAATTAAAGGATGAATTTACTCAGATGGGATAATTATTAATGTTAAATGTTATTTCTATAAGCAGACAGAATTCAAGTGGCATTTATTTCTTTTCATTCTTCCAG
Seq C2 exon
CCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCGACAGACACCTCCTTCAAGAACAAGCTGTATGAACAACATCTTGGAAAATCCAATAACTTCCAGAAGCCCAAGCCTGCCAAAGGCAAGCCTGAGGCCCACTTCTCTTTGATTCACTATGCTGGCACCGTGGACTACAACATTGCCGGCTGGCTTGACAAGAACAAGGACCCCCTGAATGAGACTGTGGTGGGGCTGTACCAGAAGTCTGCAATGAAGACTCTGGCTCTCCTCTTTGTTGGGGCAACGGGAGCGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGCATCAACTTCACCA
R:
AATGTTGTAGTCCACGGTGCC
Band lengths:
347-1159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)