GgaINT0127783 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:447456-447859:-
Coord C1 exon
chr18:447783-447859
Coord A exon
chr18:447567-447782
Coord C2 exon
chr18:447456-447566
Length
216 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
ACCAATTTCTGGTCCCACAGGAG
3' ss Score
8.04
Exon sequences
Seq C1 exon
AGGCTAGTGGTGGTGGTGGCAAGAAGGGTGGTAAGAAGAAGGGGTCTTCTTTCCAGACTGTCTCAGCTCTTTTTCGG
Seq A exon
GTAAGAATTTTATTATTTTTTTTAAATCTTTCTTTGCCTTTTTTGTTTGTTTGTTTGTTTTTATCTCTGCAAATTAGAATTAAACTAATTTTGCAACAGTTTCGGGCAAGTACATATCCATTATTAGGTGTGTGAACCTTTAATGGTGAGTTGAAGGAATCTAAGAGTGAGAATAAAAGCTTTTGTTTAAACAAATACCAATTTCTGGTCCCACAG
Seq C2 exon
GAGAACCTAAACAAACTGATGACCAACCTACGGAGTACTCACCCTCATTTTGTCCGCTGCATCATCCCAAATGAAACAAAAACACCTGGTAAGATGCTCCAGCAGAGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGTGGTGGTGGCAAGAA
R:
CTGGAGCATCTTACCAGGTGT
Band lengths:
175-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]