GgaINT0127783 @ galGal4
Intron Retention
Gene
ENSGALG00000026748 | MYH1A
Description
myosin, heavy chain 1A, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) [Source:RefSeq peptide;Acc:NP_001013414]
Coordinates
chr18:442198-442578:-
Coord C1 exon
chr18:442502-442578
Coord A exon
chr18:442286-442501
Coord C2 exon
chr18:442198-442285
Length
216 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
ACCAATTTCTGGTCCCACAGGAG
3' ss Score
8.04
Exon sequences
Seq C1 exon
AGGCTAGTGGTGGTGGTGGCAAGAAGGGTGGTAAGAAGAAGGGGTCTTCTTTCCAGACTGTCTCAGCTCTTTTTCGG
Seq A exon
GTAAGAATTTTATTATTTTTTTTAAATCTTTCTTTGCCTTTTTTGTTTGTTTGTTTGTTTTTATCTCTGCAAATTAGAATTAAACTAATTTTGCAACAGTTTCGGGCAAGTACATATCCATTATTAGGTGTGTGAACCTTTAATGGTGAGTTGAAGGAATCTAAGAGTGAGAATAAAAGCTTTTGTTTAAACAAATACCAATTTCTGGTCCCACAG
Seq C2 exon
GAGAACCTAAACAAACTGATGACCAACCTACGGAGTACTCACCCTCATTTTGTCCGCTGCATCATCCCAAATGAAACAAAAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026748:ENSGALT00000039878:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTAGTGGTGGTGGTGG
R:
CAGGTGTTTTTGTTTCATTTGGGA
Band lengths:
165-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]