HsaINT0107427 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10409329-10411273:-
Coord C1 exon
chr17:10411203-10411273
Coord A exon
chr17:10409417-10411202
Coord C2 exon
chr17:10409329-10409416
Length
1786 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAA
5' ss Score
1.91
3' ss Seq
AAACTCGCATGGTTCCACAGGAG
3' ss Score
6.13
Exon sequences
Seq C1 exon
AGGCTGGCGGTGGAAAGAAAGGTGGTAAGAAGAAGGGTTCTTCTTTCCAGACTGTGTCTGCTCTCTTCAGG
Seq A exon
GTACAAACTTCATTTTCTCTGTCTAATTAGATTTAGGATATTAAATGTACTCTATGGTGTGGGGGAAAAAACTAACCTTGCAAGGATTCTAGAACTGATGTGACTCAACGAGATAGTTCAGCTGGTAGTGGTAAGACTGAGTTTTAGGGAGCTTGAGGATAGTTTGGAAGAGGGGATAGTTTGGAAGAGATACCTCACTATTCAGAAGACACAGGAGTCAGGAGAGATGAAAGCGAATTGCAGAAGTCAGTATTAGACGGCAAAATTCGATTCTGGGGCCTGAGAATGAGGTCATTTAACCCTTAAAAGACTCCAGTGGGATAGGATTAAGTAAAGCTGAGACTTGCTTGAGGCTTTGGGAGCCTCCAAGTGATTTAGGTGCTTAAAGATACATTGGTATAGAACCGAAATGAGTAGATTTTGAAAGCTATAAGATAGAACAGTGGTGGGAATTGGAGCCTGAGTCAAAAGAAGGAAATAAGAAACCAGATGTGATAATAAATAGCACTTTTAAAAAAATTACGGCCAAGCACAGTTGCTCACGCCTGTAATCCCAGCAATTTGAGAAGCCAAGGCAGGCAGATCACTTGAGGCCAGGAGTTCGAGACTAGCCTGGCCAACATGATGAAACCCCATCTCTACCAAAAATATAAAAATTAGCCAGGCATGGTGGTGCACACCTGTAATCCCAGCTACTCAGGAGGCTGGGCATGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCCATGAGCTGAGATCATGTCACTGTACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAGGAAAAAAAGAAAAGTCTATTTTTCTTTTGGCAATCCCATTTCTGATTCCATCTCTAATAACTGATGCTGTAGATATTCGGAAAAACCAGGATTTTCAAAAGATGGAAAACTTTACACGCTTGGTAACATGGCTGTCAGTTTTCTACCAATTCCCAGAATAGGCATTAATAAAGGCCACTTTCTGTGGAATAAGTAGGAGGACACAGCTCTATATCTATGGCAAGGAATACACATTTGATAGACACACAGATACAAGTGAAAGTCAGGTAAAGAAAGAAGTGAGTGTGACTGGGCACCATGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACCAAAAATACAAAAATTAGCTGGGGGTGGTGGCATGTGCCTGTAATCCCAGCTACTCAGGAGGCTAAGGCAGGAGAATTGTTTGAACCCGGGAGGCAGAGGTTACCGTGAGCCAAGATTGCGCCACTGTACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAGAAAAAAAAAAAAGAAGAAGAAGAAAAGACAAAGAAAAAAGTGGGAGAATTAGAGGAAGGCATTGATTAGTAGTAAAATCAGACCATGTATCTAGGCAAAAAAAGAATGGGTAGAGTATTTCCATATATTTAGAGTGTCATAGTGAATTTAAAACATATACTAGGAAATTAAACAGCAGCGAACAGTCACTTCAACAGCAAGTAGAAAACTATGCTTCTAATGCACACCAACAGAAAACAGGGGGACATATTAGGAATGTGGAAATTCCAGAGATAACTCTTTGAAAATTTTCATCTGGATACTATTCATTAGAATTAAACCACTGTCATAGATCTCAATAATTATGTCTATAAATATGAATGTAGAAAACAGTACATTTTTTAAAGTATAAACTCGCATGGTTCCACAG
Seq C2 exon
GAGAATTTGAATAAGCTGATGACCAACTTGAGGAGCACTCACCCCCACTTTGTGCGGTGCATCATCCCCAATGAAACTAAAACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)