GgaINT0127789 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:443871-446111:-
Coord C1 exon
chr18:445856-446111
Coord A exon
chr18:444114-445855
Coord C2 exon
chr18:443871-444113
Length
1742 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TATCTTGTATCTCCCCATAGGAA
3' ss Score
11.88
Exon sequences
Seq C1 exon
GGAATCCATCTTCTGCATCCAGTACAACGTTCGTTCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCAGAGTCTGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAGACCAAGGAAGAGCTTGCAAAGTCTGAGGCAAAGAGGAAGGAGCTGGAGGAGAAAATGGTGTCCCTGCTGCAGGAGAAAAATGACTTGCAGCTCCAAGTGCAGGCT
Seq A exon
GTGAGTATTGCCATTTATTTTCCACCCAGAAAAAGGGCATGTAAATTCAGATTGCTCTTTCCCAAGATGACATTCAGATTATACATGATGAAATGCCAGCTATTTAGTGAGGTAGGCATCATACTGATTGTGAAGTGGAATAAAATATTGTCTAGCAGTGGCCTGGTGAGCCCTCTGATATTCAGTACAAAGTAAAATGGTGCTTGAGATGTGAGTCAGTTCTCTTGCTTTATGTGGAAGACGACATCTACAGCTAGTCAACATGAGATACTCAGTGAGTCTTGCAAGATGTAGATCTGTCTCACCAAGATCTAAAGTAAACCATGAATGCATTCTGAATATTAAATTCAATCTAGAGTTCAAACTGACAGTTGTAAGTTCAGCTGCCACATAACTAGTCTTTATTCATTTACTGAGGAATGGGAAAATATACTTGCAAACTTGCCTCAGTCCAAGAAGAAATGAATACAGAGCTCCTGCTTCTGAAAAAGTCTCACCTCCCAGGGTTGTTGAAAGGTGTTTTACTATGCATAGGAGGGTTAAGTAATGCCTGGAAAAGTGAAAAGAAGCACCCTTATACAGGGGGATTTTGGAAAGGTGAAAAGGCTTCCTGAGCCCTGTCCATCCTGTAGTTTGCGGGCATTAGTGAGTAATTTTCAAACACAAAACTCATATACCAAATTTAGGGAGCAGATGTATGTATAATAATATTAAATCATAATCTCTGGATAGGCACTTTATACCTCTGTATTCTTTACCCTTAATTTAGTACTGCACAAAACAGCAAAGATGAGTAAGCAAAAAGCATTTGCATTCATTTTTGAGCATCCTAGCTGTTTGCATCTGCAATTTGGATTTTCACTATACGCTGTGTAGTAGATGTGTTATTATTAAAATCCATGAACCTTGCAGGCACAAAAAGTTTTAAAAACTAAAGTATCATTTAAATATATTTATTACAGCTTTGTTTGTTATTCAAAGCCCATCTTACAAAGAAAACAAAAAAAACCCACAAGAAGTTACTGAAAAAAACTTGAATTACCAAATACACTCGTGTTTCCATTAGTTATGTAATTGTTTGGTGTTCAGTTAGAAAACTGAAGCATATTTTTTTCTCAGTCTAAACAAGAAAAATGCCAGTTTTGAATGTCTTACTAGTAAAGGTGTCTGTCGGCTAAATCCATTTAGTAGAAAGCTATCCCAGTAAAATATCAAAGCCTGAAAGAATACAGAGGAACCTTCAATCAGCATTAAAAACACCAGACACAGTAGTTAGAAATTCAAGTATGCCACTATAAGATGTGCAATAATTCTAATGAATGAAAAAGAGTGATATTCTTCTTTATCTAGCATTATTTTCTAAAGAACAGAATCTTTACATCCACAAATATTACTCTGTTCAGCACTATCAATGACAAAAGGGAAGCTGATTACCATGTATAAAGGAAAAAGCTAATAAGTCCAGGTGATCAACTTTCTGTGATTTGTGTCACTGCAAGAGATATCCACACAACTACCACTTCTGTGAGACAGATTTGAAAGGGCTTAAACAAAATCAAAATGATGCCTAAAGGACAGTGTGCATAATTTTCTTCCAGATACAGAAACTGAAAAAAGAGTTCATGAGTGGAACAGCTATTTCAAATATAGCTTTTAGACTTGTCAATTTACTAAGATAAAAGATTTAAATTAAAAAAGAAAAAAAGATACAGAAAATAAAGATATCTTGTATCTCCCCATAG
Seq C2 exon
GAAGCAGATAGCTTGGCTGATGCTGAGGAAAGGTGTGACCAGCTCATCAAAACCAAAATCCAGCTGGAAGCCAAAATTAAGGAGGTGACAGAGCGGGCTGAGGATGAGGAGGAAATTAATGCTGAACTGACGGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAGCTGAAGAAAGACATAGATGACCTGGAGTTAACACTGGCCAAAGTTGAGAAGGAAAAGCATGCCACTGAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=NA C2=0.395
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.4=62.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(40.6=100),PF0157614=Myosin_tail_1=PU(29.5=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGATGAAGCTGTTCTT
R:
CCTCTTCTTGGCCGTCAGTTC
Band lengths:
343-2085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]